Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1026
(766 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 68 6e-12
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 50 1e-06
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 50 1e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 50 1e-06
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 48 5e-06
At3g52350.1 68416.m05754 D111/G-patch domain-containing protein ... 46 4e-05
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 46 4e-05
At5g08535.2 68418.m01015 D111/G-patch domain-containing protein ... 44 1e-04
At5g08535.1 68418.m01014 D111/G-patch domain-containing protein ... 44 1e-04
At3g57910.1 68416.m06455 D111/G-patch domain-containing protein ... 42 3e-04
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 40 0.001
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 39 0.003
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 38 0.006
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 38 0.010
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 36 0.030
At4g25020.1 68417.m03589 KOW domain-containing protein / D111/G-... 34 0.090
At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identica... 29 3.4
At1g33520.1 68414.m04148 KOW domain-containing protein / D111/G-... 29 4.5
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 68.1 bits (159), Expect = 6e-12
Identities = 34/88 (38%), Positives = 49/88 (55%)
Frame = +3
Query: 3 DFLPPEELKKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGS 182
D++P EEL KF+ K + K + K K++ DNVG K+L K+GW EG+G+G
Sbjct: 326 DYIPLEELDKFLSKCNDAAAQKATKEAAEKA-KIQADNVGHKLLSKMGWKEGEGIGSSRK 384
Query: 183 GIVEPINKAKQPVQNLGLGASTSDWCRP 266
G+ +PI NLG+GAS +P
Sbjct: 385 GMADPIMAGDVKTNNLGVGASAPGEVKP 412
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 206 GETTSTESRTGRVHFGLVSPDDDEFDAYRKRMML 307
G+ + G G V P+DD ++ Y+KRMML
Sbjct: 393 GDVKTNNLGVGASAPGEVKPEDDIYEQYKKRMML 426
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 93 EFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
+ K+ NVGF++LQK+GW +G+GLG + GI EPI + + LGLG D
Sbjct: 61 DVKISSSNVGFRLLQKMGW-KGKGLGKQEQGITEPIKSGIRD-RRLGLGKQEED 112
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 93 EFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
+ K+ NVGF++LQK+GW +G+GLG + GI EPI + + LGLG D
Sbjct: 61 DVKISSSNVGFRLLQKMGW-KGKGLGKQEQGITEPIKSGIRD-RRLGLGKQEED 112
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +3
Query: 90 KEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
+E + E NVG +ML+ +GW+EG GLG +GSG+ EP+ +A+ + GLG+
Sbjct: 1020 EERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPV-QAQGVDRRAGLGS 1069
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +3
Query: 81 SDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDWC 260
+D F++ G KM+ K+G+ +G GLG +G GI +PI ++P ++LGLG S
Sbjct: 626 ADIGAFEVHTRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRP-KSLGLGLDFSIDT 684
Query: 261 RPMTTSSTRTGNA 299
+ SS NA
Sbjct: 685 EDPSPSSNNNNNA 697
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 96 FKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
F+ G +M+ ++G+ EG GLG E GIV P+ ++P + G+GA
Sbjct: 732 FEQHTTGFGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRP-RARGIGA 779
>At3g52350.1 68416.m05754 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 180
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDWCRPMTTSS 281
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ GLGA +P
Sbjct: 77 ISSSNIGFQLLKKHGWKEGTGLGITEQGILVPL-QAEPKHNKQGLGAEKPAKRKPAQPQD 135
Query: 282 T 284
T
Sbjct: 136 T 136
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 21 ELKKFMEKYSALKNGKEPDL-SDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEP 197
+++K ++ K GK+ L SD +F+ +G K+L+K+G+ +G GLG GIV P
Sbjct: 170 KVEKRGQEGGGAKGGKKNTLGSDIGQFEKSTKGIGMKLLEKMGY-KGGGLGKNQQGIVAP 228
Query: 198 INKAKQPVQNLGLG 239
I +P +N+G+G
Sbjct: 229 IEAQLRP-KNMGMG 241
>At5g08535.2 68418.m01015 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 116
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ G+GA
Sbjct: 14 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL-QAEPKHNKRGVGA 59
>At5g08535.1 68418.m01014 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 141
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA 242
+ N+GF++L+K GW EG GLG+ GI+ P+ +A+ G+GA
Sbjct: 39 INSSNIGFQLLKKHGWKEGTGLGIAEQGILVPL-QAEPKHNKRGVGA 84
>At3g57910.1 68416.m06455 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 265
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 27 KKFMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
++ +EK E L+ + + E N+GFK+L+++G+ G LG +GSG EP+
Sbjct: 66 RRRLEKERKQIEEDEQTLARIVDTPIGESNIGFKLLKQMGYKPGSALGKQGSGRAEPV 123
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 33 FMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPI 200
F+E + L G + D + + +++ + KM+ +G+ EG GLGV G GI+ PI
Sbjct: 276 FLESTN-LPRGVQTDTALFAKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPI 330
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 90 KEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 239
+ F+ +G K+L+K+G+ +G+GLG GIV PI +P +N+G+G
Sbjct: 97 ENFEKFSGGIGMKLLEKMGY-KGRGLGKNQQGIVAPIEVQLRP-KNMGMG 144
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +3
Query: 39 EKYSALKNGKEPD-LSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 215
+++S G E D +++ E + +++ +GW EG+ LG G+VEPI +A
Sbjct: 345 DEHSVPDTGSEEDTVAEALELSFGSGSYARRIMGNMGWKEGETLGKNTKGLVEPI-QAVG 403
Query: 216 PVQNLGLG 239
N+GLG
Sbjct: 404 NTGNVGLG 411
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 108 EDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKA-KQPVQNLGL 236
+D+ FK+++ +GW EG+GLG + GI + KQ +GL
Sbjct: 15 KDSAAFKLMKSMGWEEGEGLGKDKQGIKGYVRVTNKQDTSGVGL 58
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 126 KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSD 254
+M+ K+GW +GQGLG GI P+ AK+ + G+ + S+
Sbjct: 220 RMMAKMGWKQGQGLGKSEQGITTPL-MAKKTDRRAGVIVNASE 261
>At4g25020.1 68417.m03589 KOW domain-containing protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00467: KOW motif
Length = 375
Score = 34.3 bits (75), Expect = 0.090
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 15 PEELKKFMEKYSALKNGKEPDLSDYKEFK-LKEDNVGFKMLQKLGWNEGQGLGVEGSGIV 191
PE ++K + K PD + ++F+ D G +L GW GQG+G++ V
Sbjct: 107 PEPVEKMLLKSMRTDLESLPDAPEKEDFESFPVDGFGEALLAGYGWKPGQGIGLKAKEDV 166
Query: 192 EPINKAKQPVQNLGLGASTSD 254
+ + K N G G SD
Sbjct: 167 KIVEYEKWS-GNEGFGFGKSD 186
>At1g30330.1 68414.m03709 auxin-responsive factor (ARF6) identical
to ARF6 [Arabidopsis thaliana] GI:4102600 (Science 276
(5320), 1865-1868 (1997))
Length = 933
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 102 LKEDNVGFKMLQKLGWNEG-QGLGVEGSGI 188
LKED++G M L W+ G Q L +G G+
Sbjct: 387 LKEDDMGMSMSSPLMWDRGLQSLNFQGMGV 416
>At1g33520.1 68414.m04148 KOW domain-containing protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00467: KOW motif
Length = 462
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 69 EPDLSDYKEFKLKEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLG 239
+P L D++ + D G ++ GW G+G+G VE I + K+ GLG
Sbjct: 145 DPTLEDFESVPV--DGFGAALMAGYGWKPGKGIGKNAKEDVE-IKEYKKWTAKEGLG 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,428,921
Number of Sequences: 28952
Number of extensions: 267564
Number of successful extensions: 599
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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