Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1024X
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   1.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   1.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.4  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 LMQQHGNFVESSVRPLVVSAQVYHWSW 233
           ++Q H N  E S   L V++  + WS+
Sbjct: 102 MVQNHNNIREKSHYCLFVASNCFFWSY 128


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 LMQQHGNFVESSVRPLVVSAQVYHWSW 233
           ++Q H N  E S   L V++  + WS+
Sbjct: 102 MVQNHNNIREKSHYCLFVASNCFFWSY 128


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 262 LKLPNHVDRYQLQ 224
           ++LP HVD+Y L+
Sbjct: 93  IQLPKHVDQYLLE 105


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 304 QSGEGVGESLQGL 342
           Q G+G+G+ LQG+
Sbjct: 173 QPGKGLGKDLQGI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,177
Number of Sequences: 336
Number of extensions: 2128
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)