Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1024X
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    31   0.077
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    30   0.23 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   1.6  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    26   2.9  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   3.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   8.8  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   8.8  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 31.5 bits (68), Expect = 0.077
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +1

Query: 298 QXQSGEGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTXXXTMRSSITSQAR 477
           Q    E VG S Q   L+  ++ S     ++  R  + D IAELR    T+RS   S   
Sbjct: 406 QSNGVEPVGLSTQEQNLSPLSKRSAHNMIEKRYRSNLNDKIAELRDAVPTLRSGYNSTTA 465

Query: 478 EHVRADEVLLS 510
           + ++   V LS
Sbjct: 466 DELKGTYVPLS 476


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 177 QSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNS 25
           ++S  V   S+I+  T+++VA ++ S P N+    SA N   + +  +LNS
Sbjct: 176 KNSNHVFATSIILIVTAIAVALSLESFPSNIERYFSAVNHSAIELSDALNS 226


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 59   KFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARE 172
            K V D   N LS  +Q+ +    L+EK +  + ATA E
Sbjct: 1040 KLVNDAALNSLSNRQQLLDEAADLIEKDLEFAGATAIE 1077


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 353 VARTRPWRLSPTPSP--LWXWSTXXLFSSLMALKTS*SC*SLP 231
           VA T P+ +  T +P  LW W    +F   +AL  +  C ++P
Sbjct: 79  VATTLPYSIGYTGTPGLLWGWLIAMVFIICIALSMAELCSAMP 121


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 304 GTGLRXXCFHP*WLLKLPNHVDRY 233
           GTG+    FH  +L  LPNH + Y
Sbjct: 10  GTGMSAFIFHYPFLKALPNHFEVY 33


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 174 SSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNSIS 19
           SS   A  S    STS+S +S I S   ++L   SAT + + S    L+S S
Sbjct: 19  SSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSS 70


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 400  PSSPDPLKARCCAGPESPEPDLGDSLLHPHHSGTGLR 290
            PS+P P      + P  P P    +LL   H+GT L+
Sbjct: 1728 PSAPPP-PLPASSAPSVPNPGDRSALLQQIHTGTRLK 1763


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 129 SVSVASAICSEPDNLLFLMSATNLPT 52
           ++S ASA+C  P ++L +   +  PT
Sbjct: 119 AMSYASALCQNPTSMLAITLTSRFPT 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,592
Number of Sequences: 5004
Number of extensions: 34137
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)