Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1024X
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0242 + 19828521-19829252 31 0.72
03_06_0339 + 33246043-33247350 29 2.9
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 28 3.8
08_02_0077 - 11979497-11979654,11980012-11982178 28 3.8
05_04_0084 - 17788077-17789240 28 5.1
02_05_1035 + 33659965-33660155,33660992-33661066,33661634-336616... 28 5.1
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 27 6.7
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 27 6.7
05_06_0105 + 25607374-25607673,25608319-25608377,25608761-256089... 27 8.8
04_04_1129 - 31107892-31110246 27 8.8
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 27 8.8
>01_05_0242 + 19828521-19829252
Length = 243
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 318 CRRESPRSGSGDSGPAQHRAFNGSG 392
CRR+ R G+GD PA+ RA G G
Sbjct: 72 CRRDRGRGGAGDGVPAKLRAGRGGG 96
>03_06_0339 + 33246043-33247350
Length = 435
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +1
Query: 277 ENRXSVDQXQSGEGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELR 432
E R VDQ GEG G +A A + P D+D R R+ +AELR
Sbjct: 371 ELREVVDQPVLGEGAGVMASVEAVAELAFRCVAP--DKDDRPDAREALAELR 420
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 28.3 bits (60), Expect = 3.8
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = -1
Query: 126 VSVASAICSEPDNLLFLMSATNLPTVSMCFS 34
+S+ +++C++P N +F++S + T+S F+
Sbjct: 616 ISILTSLCNDPKNCVFIVSGRDRTTLSEWFA 646
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 360 PAQHRAFNGSGLEGTYKRSHRRAPNRXXDNEVVHNE 467
P +H+A + G +G K+SH++ + E++H E
Sbjct: 166 PPEHKAVSAKG-QGKLKKSHKQCDSAIEGQELIHVE 200
>05_04_0084 - 17788077-17789240
Length = 387
Score = 27.9 bits (59), Expect = 5.1
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 274 DENRXSVDQXQSGEGVGESLQGLVLATPARHSIVPSTDQDLREPIRDHIAELRTXXXTMR 453
D++ V++ + EG E +Q A + V T ++LRE + IAELR T
Sbjct: 132 DDDDDEVEEREEDEGDEEGMQLAPAAVVSEDRSV--TYEELRERLHRRIAELRGNRCTRP 189
Query: 454 SSITSQARE 480
+ RE
Sbjct: 190 EFLNKPKRE 198
>02_05_1035 +
33659965-33660155,33660992-33661066,33661634-33661670,
33662415-33662487,33662635-33662801
Length = 180
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 339 SGSGDSGPAQHRAFNGSGLEGTYKRSHRR 425
S SG GP R F+ +G YK+S R
Sbjct: 33 SASGSPGPTLQRHFSNDDGQGKYKKSQHR 61
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 246 MLIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEP 94
+L+ ++SS L AAA R P ++ A A + ST+V +A +EP
Sbjct: 18 LLLLSNSSLAPSLPTVAAACRMPPAAAAAARSVSVSVSTAVDAPTAAAAEP 68
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 324 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAPN 434
RE SGS ++G A G G +R HRR P+
Sbjct: 709 RELLSSGSSEAGAAAAGGGGGGGDSSGGRRGHRRTPS 745
>05_06_0105 +
25607374-25607673,25608319-25608377,25608761-25608917,
25609157-25609461,25609866-25609986,25610334-25610422,
25610491-25610569
Length = 369
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 237 ATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICS 100
A+S S +R AA QSS A +L S + ST ++ + +CS
Sbjct: 15 ASSLSSSAAALRSAAVLHGNQSSLARSLVSRLAVSTDPAIDALVCS 60
>04_04_1129 - 31107892-31110246
Length = 784
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 186 RTPQSSRAVALDSLIIFSTSVSVA-SAICSEPDNLLFLMSATNLP 55
R ++R AL S+S A SA+ S+PD L L++A++LP
Sbjct: 85 RPAAAARLAALALRFRSGPSLSAALSALPSQPDPALLLLAASSLP 129
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +3
Query: 315 GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAPNRXXDNEVVHNES 470
GCR+ GSG+ G GS + K HR + E + ES
Sbjct: 334 GCRQSQSGGGSGEDGGHDDDDGEGSNKKRRRKNYHRHTAEQIRIMEALFKES 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,779
Number of Sequences: 37544
Number of extensions: 297669
Number of successful extensions: 1060
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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