Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1024X
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)                      30   0.97 
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               29   3.0  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   28   3.9  
SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)               27   9.1  
SB_12990| Best HMM Match : PSI (HMM E-Value=6)                         27   9.1  

>SB_48643| Best HMM Match : DUF663 (HMM E-Value=0)
          Length = 450

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 114 SAICSEPDNLLFLMSATNLPTVSMCFS 34
           S++CS  DN  FL+  + LP  S+CF+
Sbjct: 36  SSLCSVRDNPEFLVFCSGLPVTSLCFA 62


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 25/95 (26%), Positives = 48/95 (50%)
 Frame = +2

Query: 8   LESLDIELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVL 187
           L+ +  EL +++       VA +   ++ G + I+ A   ++E ++S S  T + + G L
Sbjct: 24  LDDIKTELRQENASIKANAVAKLAYLEMLGYD-ISWAAFNIIE-VMSSSKFTYKRI-GYL 80

Query: 188 RAAARRISSSLPLELVAINMIRKF*EPSGMKTXXP 292
            AA++     L + ++  NMIRKF  P  ++   P
Sbjct: 81  -AASQSFHEGLDILMLTTNMIRKF--PEALRPAFP 112


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 26  ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLR 190
           +  E H ET  +FV  +  NK+  +EQ+       +E  I+ SN    +  G L+
Sbjct: 576 DYKEYHTETRVRFVITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLK 630


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 358 ARHSIVPSTDQDLREPIRDHIAELRTXXXTMRSSITSQAREHVRADEVLLSS 513
           +R  IV  TD D +    +  +EL +    M+  ITS   E +  +E+L+ S
Sbjct: 113 SRRKIVRHTDSDTQTVESESDSELMSSSDLMQQEITSLKAELLATEELLMKS 164


>SB_50401| Best HMM Match : Pkinase (HMM E-Value=1.7e-16)
          Length = 535

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 315 GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAPN 434
           GC RE  +    DSG   H    G  L    KR  RR+PN
Sbjct: 398 GCMREGEQDVEKDSGDHHHLDREGHKLS---KRFRRRSPN 434


>SB_12990| Best HMM Match : PSI (HMM E-Value=6)
          Length = 270

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 315 GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAPN 434
           GC RE  +    DSG   H    G  L    KR  RR+PN
Sbjct: 133 GCMREGEQDVEKDSGDHHHLDREGHKLS---KRFRRRSPN 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,000
Number of Sequences: 59808
Number of extensions: 291067
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)