Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1024X
         (513 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    25   2.0  
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    24   2.6  
Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.        23   6.1  

>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 379 KARCCAGPESPEPDLGDSLLHPHHSGTGLR 290
           + +C A  +SP+   G+  LHP   G+ L+
Sbjct: 19  RTKCAACLDSPDGMNGNESLHPRPLGSALK 48


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 240 IATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAI 106
           + T+SS K+EL+R A       S   + +D  I      + ++AI
Sbjct: 689 VVTTSSQKIELVREAFEAFGRVSGARLNVDKTIALDVGYTTSNAI 733


>Y09953-1|CAA71084.1|   91|Anopheles gambiae histone H4 protein.
          Length = 91

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 342 GSGDSGPAQHRAFNGSGLEGTYKRSHRRAPNR 437
           G G  G  +HR      ++GT K + RR   R
Sbjct: 10  GLGKGGARRHRKVLRDNIQGTTKPAIRRLARR 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,699
Number of Sequences: 2352
Number of extensions: 8842
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46514490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)