Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1024X
(513 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111739-1|AAI11740.1| 558|Homo sapiens RBM26 protein protein. 30 5.5
BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein. 30 5.5
BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif prote... 30 5.5
AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif prote... 30 5.5
AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif prote... 30 5.5
AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif prote... 30 5.5
AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif prote... 30 5.5
AK027456-1|BAB55125.1| 680|Homo sapiens protein ( Homo sapiens ... 30 5.5
AK027339-1|BAB55046.1| 534|Homo sapiens protein ( Homo sapiens ... 30 5.5
U04810-1|AAA79333.2| 778|Homo sapiens tastin protein. 29 7.2
BC032583-1|AAH32583.1| 778|Homo sapiens trophinin associated pr... 29 7.2
AK130753-1|BAC85422.1| 201|Homo sapiens protein ( Homo sapiens ... 29 7.2
>BC111739-1|AAI11740.1| 558|Homo sapiens RBM26 protein protein.
Length = 558
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 294 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 328
>BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein.
Length = 983
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 719 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 753
>BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 716 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 750
>AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 716 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 750
>AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 744 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 778
>AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 716 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 750
>AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 744 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 778
>AK027456-1|BAB55125.1| 680|Homo sapiens protein ( Homo sapiens
cDNA FLJ14550 fis, clone NT2RM2001696. ).
Length = 680
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 416 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 450
>AK027339-1|BAB55046.1| 534|Homo sapiens protein ( Homo sapiens
cDNA FLJ14433 fis, clone HEMBA1006676. ).
Length = 534
Score = 29.9 bits (64), Expect = 5.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTL 130
E+ EKHIET ++ + NK SE AE TL
Sbjct: 270 EILEKHIETQKMLISKLEKNKTMKSEDKAEIMKTL 304
>U04810-1|AAA79333.2| 778|Homo sapiens tastin protein.
Length = 778
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 400 PSSPDPLKARCCAGPESPEPDLGDSLLHP 314
P+ P P +A C + PE PEP L + L P
Sbjct: 517 PAEPGPPEAFCRSEPEIPEPSLQEQLEVP 545
>BC032583-1|AAH32583.1| 778|Homo sapiens trophinin associated
protein (tastin) protein.
Length = 778
Score = 29.5 bits (63), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 400 PSSPDPLKARCCAGPESPEPDLGDSLLHP 314
P+ P P +A C + PE PEP L + L P
Sbjct: 517 PAEPGPPEAFCRSEPEIPEPSLQEQLEVP 545
>AK130753-1|BAC85422.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ27243 fis, clone SYN08134. ).
Length = 201
Score = 29.5 bits (63), Expect = 7.2
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 457 TTSLSXXRFGA-LRCDLL*VPSSPDPLKARCCAGPESPEPDLG 332
TT LS R G LRC LL V SP L++ C+G +P G
Sbjct: 106 TTRLSHLRAGVTLRCVLLCVSESPVGLRSVACSGDLLGDPLTG 148
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,998,937
Number of Sequences: 237096
Number of extensions: 1466496
Number of successful extensions: 3823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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