Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1024X
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical ... 31 0.37
U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily ass... 31 0.64
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 29 2.6
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 28 3.4
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 28 3.4
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 4.5
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 4.5
Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical pr... 27 7.9
U20864-11|AAV58867.1| 583|Caenorhabditis elegans C. elegans ADA... 27 7.9
U20864-10|AAK68355.1| 596|Caenorhabditis elegans C. elegans ADA... 27 7.9
>AL032657-8|CAB63370.1| 389|Caenorhabditis elegans Hypothetical
protein Y47H9C.8 protein.
Length = 389
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 2 APLESLDIELS--EKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESN 157
+P+E L+++L E ++E VG+ +AD K E++ E TL + + + +N
Sbjct: 39 SPIEDLELQLEQPEINVEEVGRIIADGIIEKTLDDEKLKELTLKFAKNVPTMAN 92
>U39470-2|AAC71118.1| 862|Caenorhabditis elegans Temporarily
assigned gene nameprotein 127 protein.
Length = 862
Score = 30.7 bits (66), Expect = 0.64
Identities = 19/64 (29%), Positives = 37/64 (57%)
Frame = -1
Query: 195 AARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNSISK 16
+++R Q+S A +LDS ++ +S AS+ ++P +++ T+S+ S +SI
Sbjct: 729 SSKRNSQASNAASLDSFGSSTSGISTASSNNNDPSMETLTSKLSHISTISINDSPSSI-- 786
Query: 15 DSRG 4
DS+G
Sbjct: 787 DSQG 790
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 324 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 431
R +PR G GP +R G G G+Y R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 324 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 431
R +PR G GP +R G G G+Y R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 324 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 431
R +PR G GP +R G G G+Y R P
Sbjct: 325 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 360
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +3
Query: 324 RESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHRRAP 431
R +PR G GP +R G G G+Y R P
Sbjct: 328 RNNPRGPGGPGGPGGYRGGRGGGRGGSYGNFGNRGP 363
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 364 HSIVPSTDQDLREPIRDHIAELRTXXXTMRSSITS 468
H ++ +DLRE +R+H+ EL T+ +++ S
Sbjct: 198 HVLIEKEVEDLREKVREHLGELSKQSETIGNALHS 232
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 139
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 139
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 26 ELSEKHIETVGKFVADIRNNKLSGSEQIAEATLTLVEK 139
++ EK I+T+G VAD + SE + + TLVEK
Sbjct: 736 QIFEKEIKTLGIRVADAKRQNDELSELLESKSTTLVEK 773
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 26 ELSEKHI---ETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAA 196
E+SEK E G AD + ++Q+ A+LT + +++ + + ELC +
Sbjct: 111 EVSEKEDGSEEEAGTSGADEEGKQYKNTDQLVGASLTCIFEVLEQLSRRDAELCVQALES 170
Query: 197 ARRISSSLPLE 229
+ S+P++
Sbjct: 171 LLSLIQSMPID 181
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 26 ELSEKHI---ETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAA 196
E+SEK E G AD + ++Q+ A+LT + +++ + + ELC +
Sbjct: 111 EVSEKEDGSEEEAGTSGADEEGKQYKNTDQLVGASLTCIFEVLEQLSRRDAELCVQALES 170
Query: 197 ARRISSSLPLE 229
+ S+P++
Sbjct: 171 LLSLIQSMPID 181
>Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical
protein F48F7.2 protein.
Length = 299
Score = 27.1 bits (57), Expect = 7.9
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 APLESLDIELSEKHI-ETVGKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATARELC 178
A LE + ++L +H+ E + V +I NN +G EQ+ + + + + + +A +++C
Sbjct: 211 AMLEEIFLDL--QHLTEAQDEMVTNIDNNVENGLEQVKQGSANVKTAVEYKKSAMRKKIC 268
Query: 179 GVLRAAARRISSSLPLELVAI 241
AA I+ L L +VAI
Sbjct: 269 ----VAAILITILLILIIVAI 285
>U20864-11|AAV58867.1| 583|Caenorhabditis elegans C. elegans
ADA-2 protein, isoform b protein.
Length = 583
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -2
Query: 89 IYCFLCPLRICRL-FRC 42
+ CF CPLRIC L F+C
Sbjct: 24 VKCFECPLRICILCFQC 40
>U20864-10|AAK68355.1| 596|Caenorhabditis elegans C. elegans
ADA-2 protein, isoform a protein.
Length = 596
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Frame = -2
Query: 89 IYCFLCPLRICRL-FRC 42
+ CF CPLRIC L F+C
Sbjct: 37 VKCFECPLRICILCFQC 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,721
Number of Sequences: 27780
Number of extensions: 209911
Number of successful extensions: 578
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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