Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1024X
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 471 LTRYGRPHC 445
           + RYG+PHC
Sbjct: 588 VVRYGKPHC 596


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 471 LTRYGRPHC 445
           + RYG+PHC
Sbjct: 626 VVRYGKPHC 634


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 433 FGALRCDLL*VPSSPDPLKARCCAGPESPE 344
           F   RCD     +  DP K  C   P +P+
Sbjct: 293 FTECRCDPGYFRAEKDPKKMPCTQPPSAPQ 322


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 337 LGDSLLHPHHSGTGLRXXCFHP 272
           LG  L   H+S TG    CF P
Sbjct: 154 LGVRLPDIHNSVTGKTTACFEP 175


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 385 PLKARCCAGPESPEPDLGDS 326
           P+ A CC  PE+    + +S
Sbjct: 158 PIPASCCNSPENNTCSISNS 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,500
Number of Sequences: 438
Number of extensions: 2361
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)