Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1024X
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont... 35 0.028
At1g68780.1 68414.m07862 leucine-rich repeat family protein cont... 31 0.46
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce... 30 0.80
At4g38560.1 68417.m05459 expressed protein 29 1.4
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 29 2.4
At5g66330.1 68418.m08363 leucine-rich repeat family protein cont... 28 3.2
At3g04560.1 68416.m00484 expressed protein 28 3.2
At2g25470.1 68415.m03050 leucine-rich repeat family protein cont... 28 3.2
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 27 5.6
At1g74180.1 68414.m08591 leucine-rich repeat family protein cont... 27 5.6
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 7.4
At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putativ... 27 7.4
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 27 7.4
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA... 27 9.8
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ... 27 9.8
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 27 9.8
>At3g53240.1 68416.m05868 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 891
Score = 35.1 bits (77), Expect = 0.028
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Frame = +2
Query: 56 GKFVADIRNNKLSGSEQIAEATLTLVEKIISESNATAR---ELCG-----VLRAAARRIS 211
G + D+RNNKLSG+ + +T ++ ++ E+N T + ELCG +L A R++
Sbjct: 563 GLRLLDLRNNKLSGNIPLFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLN 622
Query: 212 SSLP 223
S+P
Sbjct: 623 ESIP 626
>At1g68780.1 68414.m07862 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 432
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +2
Query: 71 DIRNNKLSG--SEQIAEATLTLVEKIISESNATARELCGV 184
D+RNN+LSG S++I E T +LVE ++S +N A +L G+
Sbjct: 273 DLRNNRLSGGLSKEIQEMT-SLVELVLS-NNRLAGDLTGI 310
>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
tryoni membrane transporter (white) gene, PID:g3676298
Length = 577
Score = 30.3 bits (65), Expect = 0.80
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -1
Query: 252 LIMLIATSSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLM 73
++ +I S +GK L+ AAR +P +S ++ L+S++I +S S+ + D L+
Sbjct: 43 ILAIIGPSGAGKSTLLDILAARTSP-TSGSILLNSVLINPSSYRKISSYVPQHDTFFPLL 101
Query: 72 SATNLPTVSMCFSL-NSISKDS 10
+ + T S L ++SK S
Sbjct: 102 TVSETFTFSASLLLPKNLSKVS 123
>At4g38560.1 68417.m05459 expressed protein
Length = 521
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +3
Query: 267 HQG*KQXXRRPVPEW*GCRRESPRSGSGDSGPAQHRAFNGSGLEGTYKRSHR 422
H+ Q R PE G E PRS + P HR+ +GL+ K R
Sbjct: 167 HRTRNQGPRSKTPEPRGSYLEPPRSRIPQTQPVPHRSLESAGLKSPQKGETR 218
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 138 FSTSVSVASAICSEPDNLLFLMSATNLPTVSMCFSLNSISK 16
F S S++C PD + + ++T L T + C L I K
Sbjct: 154 FKASTKTVSSLCVSPDGKILVTASTQLKTFN-CSDLKKIQK 193
>At5g66330.1 68418.m08363 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5B
[Lycopersicon esculentum] gi|3894391|gb|AAC78595
Length = 418
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +2
Query: 74 IRNNKLSGSEQIAEATLTLVEKIISESNATARELCGVLRAAARRISSSLPLELVAINMIR 253
+ N SGS + ++T++E+++ +SN L G + A+ +SS LE+ N+
Sbjct: 135 VSGNSFSGSIPDSVGSMTVLEELVLDSN----RLYGSIPASFNGLSSLKRLEIQLNNISG 190
Query: 254 KF*EPSGMK 280
+F + S +K
Sbjct: 191 EFPDLSSLK 199
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 231 SSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLL 82
+SS + ++ A + +TP + R+V D +FS + VA + NLL
Sbjct: 141 TSSYFIAILEAAMSSKTPCTDRSVRADYHALFSAAQDVAECLDKSQKNLL 190
>At2g25470.1 68415.m03050 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 910
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 65 VADIRNNKLSGSEQIAEATLTLVEKIISESNATA---RELC 178
+ D+RNNKLSGS + T ++ ++ +N T RELC
Sbjct: 583 ILDLRNNKLSGSIPQFDDTQSINILLLKGNNLTGSIPRELC 623
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 360 PAQHRAFNG-SGLEGTYKRSHRRAPNR 437
P + R NG SG G YKR+ R+P R
Sbjct: 130 PQEMRTTNGTSGRHGDYKRTSHRSPRR 156
>At1g74180.1 68414.m08591 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 951
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 62 FVADIRNNKLSGSEQIAEATLTLVEKIISESNATA---RELC 178
++ D+RNNKLSGS T ++ ++ +N T R+LC
Sbjct: 624 YILDLRNNKLSGSIPQFVNTGKMITLLLRGNNLTGSIPRKLC 665
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -1
Query: 231 SSSGKLELIRRAAARRTPQSSRAVALDSLIIFSTSVSVASAICSEPDNLLFLMSATNLPT 52
S S L L+ A TP ++ A + + +ST S++ + PD + + + N+P
Sbjct: 6 SLSSYLLLLISLTAIATPTTTSATTIG--VTYSTPASISGTVQLSPDRIAEKVVSMNIPA 63
Query: 51 VSM 43
V +
Sbjct: 64 VRL 66
>At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putative
similar to Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate
synthase) from {Kluyveromyces lactis} SP|Q07158,
{Saccharomyces cerevisiae} SP|Q00764; contains Pfam
profiles PF00982: Glycosyltransferase family 20,
PF02358: Trehalose-phosphatase
Length = 856
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 126 VSVASAICSEPDNLLFLMSATNLPTVS 46
VSV A+C +P+N +F++S ++S
Sbjct: 612 VSVLKALCEDPNNTVFIVSGRGRESLS 638
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 101 EQIAEATLTLVEKIISESNATARELCGVLRAAARRISSSLPLELVAINMIRKF*EPSG 274
E+ ++ T V + ++ S+ G + +SS +P E A+N I +PSG
Sbjct: 314 ERSSDVPFTSVAEKVNASDGEVLPDSGTVDVVVSEVSSDVPAETQALNAISLDSQPSG 371
>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
identical to half-molecule ABC transporter ATM3
GI:9964121 from [Arabidopsis thaliana]; almost identical
to mitochondrial half-ABC transporter STA1 GI:9187883
from [Arabidopsis thaliana]; identical to cDNA
mitochondrial half-ABC transporter (STA1 gene)GI:9187882
Length = 728
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 195 AARRTPQSSRAVALDSLIIFSTSVSVASAICSE 97
AA +T +S + IIFST++S A +CS+
Sbjct: 375 AALQTQRSLAFLNFGQSIIFSTALSTAMVLCSQ 407
>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
trehalose-phosphatase family protein contains Pfam
profile: PF02358 trehalose-phosphatase
Length = 861
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 126 VSVASAICSEPDNLLFLMSATNLPTVS 46
+S A+CS+P+N +F++S ++S
Sbjct: 617 ISALKALCSDPNNTIFIVSGRGKVSLS 643
>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1006
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 11 ESLDIELSEKHIETVGKFVADIRNNKLSGSEQI 109
+ LD+ E+ IE + +IR++KLSG+ +I
Sbjct: 361 DGLDLLAEERRIERLANERHEIRSSKLSGTRRI 393
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,098,090
Number of Sequences: 28952
Number of extensions: 202737
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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