Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1023
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    65   9e-12
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    29   0.71 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   2.2  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   3.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   3.8  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    26   5.0  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   5.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   5.0  
SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces ...    26   6.6  
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    26   6.6  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   8.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 30/60 (50%), Positives = 40/60 (66%)
 Frame = -3

Query: 436 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 257
           DKKSY  Y+K YMK + A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D
Sbjct: 80  DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPD 139



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 30/57 (52%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
 Frame = -2

Query: 677 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADE 510
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEE 56



 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = -2

Query: 254 MVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 165
           MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 141 MVVLMNYRE-DGIT-PYMIFFKDGLVSEKF 168


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 124 ASLELLSYFLSNI*NFSSSRPCLKNIMIGICVPSKSLY 237
           AS ELL+       NFS+ R CL+N ++  CVP   +Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 434 VTEAYVSTSLWFRTMSTPLSTAESVPRQPLQP 529
           +T   +S S    T S+P  TA   P QPLQP
Sbjct: 265 MTNQGMSVSPGVETTSSPFFTAPVEPNQPLQP 296


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 485 PLSTAESVPRQPLQPKD*NPRSGYHPVLSSPTYRSLRK*LHRPIS 619
           P+S ++S       PK  N  +G  P  SSPT       ++RP S
Sbjct: 328 PISVSQSSDSSSSIPKKSNDEAGGSPSKSSPTRPGFNDYVNRPTS 372


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 640  ISSPVIMSL*IFILMDWRRLKII 708
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 618 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 728
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 408 LRYNV*DFLSPKRMFRLACGSGLCQLRSRRP-SPCLVSLF-SRRIKTLDLDI 557
           +RY      + K  +R+  G G C+ R+R   S  ++S F S  +K ++ DI
Sbjct: 150 VRYTFNFITNSKSFYRIGLGIGRCESRNREDVSDYVLSKFNSNEMKLIETDI 201


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 288 SSLLGS-LWIVMDGCHDG 238
           S L+G+ LWI+MD CH G
Sbjct: 77  SYLVGTNLWIIMDYCHGG 94


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 376  EEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGWLP*WNIE 230
            E+   +Q E  K+   +  K++     EL+    E++D DG     N+E
Sbjct: 1479 EQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLE 1527


>SPBPJ4664.03 |mfm3||M-factor precursor Mfm3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 41

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 204 DWYLRTIKVSIFHHGNHPSQSIDSPVKN 287
           D    T+  S+ + GN PS++++  VKN
Sbjct: 2   DSMANTVSSSVVNTGNKPSETLNKTVKN 29


>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 222 IKVSIFHHGNHPSQSIDSPVKN*SSLNLPRMSFITLFMFVL 344
           ++ S F    HP Q + S ++    +N    SFITL  F+L
Sbjct: 91  LRSSNFSVAGHPFQGVLSRIRIFLRINTKMHSFITLNKFIL 131


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 284 ELKFLKPAEDVFHYFVHVCFKYFNLVR 364
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,957
Number of Sequences: 5004
Number of extensions: 68123
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)