Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1023
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    57   1e-08
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   2.3  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    29   3.0  
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    28   9.1  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 40/63 (63%)
 Frame = -3

Query: 436 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 257
           DKK +  ++K Y+K L AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  D
Sbjct: 83  DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDD 139

Query: 256 GWL 248
           G L
Sbjct: 140 GGL 142



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
 Frame = -2

Query: 677 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAE 522
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAE 52


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 439  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 266
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 265  D 263
            +
Sbjct: 1195 E 1195


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +2

Query: 167 ISLLLDHV*KTS*LVFAYHQSLYIPSWQPSITIHRLPSKE 286
           +S +L+   KT+  +F Y   LY+P++   + +HRLP+++
Sbjct: 343 LSFVLEPTPKTARRMF-YGSLLYLPAFMAGLLLHRLPNEQ 381


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 212 FAYHQSLYIPSWQPSITIH-RLPSKELKFLKPAEDV 316
           F YH  +Y+ SW   I  H  + SK++K + P  D+
Sbjct: 264 FLYHGRMYVSSWH--ICFHSNVFSKQIKVMLPLRDI 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,635,924
Number of Sequences: 37544
Number of extensions: 401432
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)