Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1023
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_13857| Best HMM Match : Thymosin (HMM E-Value=1.8)                  29   3.0  
SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12)                   29   4.0  
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                28   7.0  

>SB_1755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 508 HGLGRRERS*HSPEPQASRNIRFGDKKS 425
           H LGRR+ +   P P  +R++RF DK+S
Sbjct: 128 HRLGRRDPNKDKPRPLIARSLRFQDKES 155


>SB_13857| Best HMM Match : Thymosin (HMM E-Value=1.8)
          Length = 144

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 508 HGLGRRERS*HSPEPQASRNIRFGDKKS 425
           H LGRR+ +   P P  +R +RF DK+S
Sbjct: 115 HRLGRRDPNKDKPRPLIARLLRFQDKES 142


>SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12)
          Length = 382

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 430 SCHRSVCFD*PVVQDYVNSALDGRVRASSASSAE 531
           S H     D PVV+ Y+NSA D    A S  S+E
Sbjct: 103 SSHSRTGNDLPVVKSYLNSATDDSTDAESTQSSE 136


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 346 ILQLGQAPSLPILLLIFSYSL*GTMCRISCHRSVC 450
           +L+  Q  S    LL+  Y +  T  R+ CHR VC
Sbjct: 305 LLRCNQTRSEICTLLMGEYPMGSTKFRVKCHRGVC 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,941,082
Number of Sequences: 59808
Number of extensions: 463430
Number of successful extensions: 1099
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)