Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1023
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical p... 69 4e-12
Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 29 4.7
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 29 4.7
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 28 6.2
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 6.2
U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant respons... 28 8.1
U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant respons... 28 8.1
U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant respons... 28 8.1
AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant respo... 28 8.1
AC024791-11|AAF60659.1| 410|Caenorhabditis elegans Hypothetical... 28 8.1
>Z79754-10|CAB02099.1| 181|Caenorhabditis elegans Hypothetical
protein F25H2.11 protein.
Length = 181
Score = 68.9 bits (161), Expect = 4e-12
Identities = 31/56 (55%), Positives = 41/56 (73%)
Frame = -2
Query: 677 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSAEEADE 510
M IYKDI T DE+ SD++ MKLVD+++YE G+ V R +G+I + G NPSAEE E
Sbjct: 1 MLIYKDIFTDDELSSDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAE 56
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -2
Query: 251 VAMMEYRDFDGTQIPIMMFFKHGLEEEK 168
VA++EYRD DGT++P +M K + EEK
Sbjct: 153 VAIIEYRDVDGTEVPTLMLVKEAIIEEK 180
Score = 34.7 bits (76), Expect = 0.071
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -3
Query: 442 FGDKKSYTLYLKDYMKKLVAKLEEKAPDQ--VEVFKTNMNKVMKDILG--RFKELQFFTG 275
+ D + Y+K +MK ++ +E+ D+ V+ FK + + +L RFK L FF G
Sbjct: 82 YEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIG 141
Query: 274 E 272
E
Sbjct: 142 E 142
Score = 34.3 bits (75), Expect = 0.094
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = -1
Query: 510 GTDSAVESGVDIVLNHRLVE 451
G+D VE G+DIVLNH+LVE
Sbjct: 59 GSDEHVERGIDIVLNHKLVE 78
>Z81549-2|CAB04473.1| 167|Caenorhabditis elegans Hypothetical
protein F55C9.3 protein.
Length = 167
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 189 FEKHHDWYLRTIKVSIFHHGNHPSQSIDSPVKN*SSLNLPRMSFITLFMFVLNT 350
F + ++ LR K+ +FH N SPV+ LN + SF+T F NT
Sbjct: 93 FRRRYNVELRHPKLRLFHFTNETQAK--SPVETPFFLNHKKSSFLTFFNCFFNT 144
>AF101316-3|AAC69232.2| 508|Caenorhabditis elegans Hypothetical
protein F52F10.2 protein.
Length = 508
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 326 FVHVCFKYFNLVRRLLFQFCY*FFHI 403
F+++C +Y RR L FCY F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 433 KKSYTLYLKDYMKKLVAKLEEK 368
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 433 KKSYTLYLKDYMKKLVAKLEEK 368
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 433 KKSYTLYLKDYMKKLVAKLEEK 368
+K+Y YL+++MK LVA + EK
Sbjct: 754 EKTYKQYLREFMKSLVALMSEK 775
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = -3
Query: 436 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKE 293
+KK+ L L +K + K+EEKA K+ ++K +KD L R K+
Sbjct: 22 EKKAKGLKLNKVDRKRIVKIEEKA-----ALKSKVDKAVKDELERLKK 64
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -2
Query: 704 IFNRLQSIKMKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPSA 525
+ NR+ I Y+++ DEM +D + + Y++ L+ R+ G E F S+
Sbjct: 2599 VSNRVHLIMKSEYEELAEHDEMIADIIP-RDETSIQYKMINFLLFRSNG----ESFEESS 2653
Query: 524 EEADEAR 504
ADE R
Sbjct: 2654 RRADECR 2660
>U49954-5|AAA93427.2| 445|Caenorhabditis elegans Odorant response
abnormal protein4, isoform a protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/36 (19%), Positives = 23/36 (63%)
Frame = +3
Query: 627 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSL 734
+++ HL+ + ++LH++ +E ++ ++ K G ++
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITV 333
>U49954-4|AAN84809.1| 473|Caenorhabditis elegans Odorant response
abnormal protein4, isoform c protein.
Length = 473
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/36 (19%), Positives = 23/36 (63%)
Frame = +3
Query: 627 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSL 734
+++ HL+ + ++LH++ +E ++ ++ K G ++
Sbjct: 326 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITV 361
>U49954-3|AAN84808.1| 475|Caenorhabditis elegans Odorant response
abnormal protein4, isoform b protein.
Length = 475
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/36 (19%), Positives = 23/36 (63%)
Frame = +3
Query: 627 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSL 734
+++ HL+ + ++LH++ +E ++ ++ K G ++
Sbjct: 328 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITV 363
>AF055911-1|AAC39022.1| 445|Caenorhabditis elegans odorant response
protein ODR-4 protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.1
Identities = 7/36 (19%), Positives = 23/36 (63%)
Frame = +3
Query: 627 SVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSL 734
+++ HL+ + ++LH++ +E ++ ++ K G ++
Sbjct: 298 AIKHHLVRNLFARVELHYESMEVVEEERSPKTGITV 333
>AC024791-11|AAF60659.1| 410|Caenorhabditis elegans Hypothetical
protein Y47G6A.7a protein.
Length = 410
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 538 LILRLKRLTRHGLGRRERS*HSPEPQASRNIRFGDKK 428
L+L L + HG+ +R + H P P +S + R D +
Sbjct: 364 LVLCLSGMLLHGMNKRHQRAHRPLPTSSTSTRSDDSR 400
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,401,708
Number of Sequences: 27780
Number of extensions: 370589
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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