Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1023
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    52   3e-07
At3g05540.1 68416.m00607 translationally controlled tumor family...    49   4e-06
At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR...    31   0.82 
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    29   2.5  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   3.3  
At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase, puta...    29   4.4  
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de...    29   4.4  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
 Frame = -2

Query: 677 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEADE 510
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT    D+ I G NPSAEE  E
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGE 56



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 27/63 (42%), Positives = 34/63 (53%)
 Frame = -3

Query: 436 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCD 257
           DKK +  Y+K Y+K L  KL E+  DQ  VFK  +    K +L R  + QFF GE M  D
Sbjct: 83  DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIEGATKFLLPRLSDFQFFVGEGMHDD 139

Query: 256 GWL 248
             L
Sbjct: 140 STL 142


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 21/58 (36%), Positives = 37/58 (63%)
 Frame = -3

Query: 436 DKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMD 263
           DKK + +++K Y+K+L  KL+    +  E+FK ++    K ++ + K+ QFF GESM+
Sbjct: 70  DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIESATKFLMSKLKDFQFFVGESME 124



 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = -2

Query: 677 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSA 525
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G  + EG +  A
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEGG-EDEGVDDQA 51


>At2g17050.1 68415.m01968 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1355

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 406 DYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ-FFTGESMD 263
           D M+  + KL    P  +EVFK+N N + ++    F ++  FF GE  D
Sbjct: 226 DKMEVKLLKLNHPPPQIMEVFKSNYNALNENEKSMFLDIACFFRGEKAD 274


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 650 GDEMFSDTYKMKLVDEVIYEVT--GRLVTRAQGDIQIEGFNPSAEEADE 510
           G+   S   K +++D V+  +T  G  +T  +G+   EGF P+AEEAD+
Sbjct: 238 GEGFNSKFAKGQMLDGVVKNLTRSGAFITIGEGE---EGFLPTAEEADD 283


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 567 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 722
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At1g78390.1 68414.m09135 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; similar to neoxanthin cleavage
           enzyme GI:9857290 from [Vigna unguiculata]
          Length = 657

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 463 VVQDYVNSALDGRVRASSASSAEGLKPSIWISPCALVTNL 582
           VV  YV+S+++ +   SS+  +   KP  W   C  VTNL
Sbjct: 95  VVPCYVSSSVNKKSSVSSSLQSPTFKPPSWKKLCNDVTNL 134


>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 430

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 451 NIRFGDKKSYTLYLKDYMKKLVAKLEEKA 365
           N RFGDKK+Y +   +Y + L+   E++A
Sbjct: 314 NPRFGDKKTYQMNPANYREALIEAREDEA 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,461
Number of Sequences: 28952
Number of extensions: 343180
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)