Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1022
         (395 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q81Q57 Cluster: Permease, putative; n=8; Bacillus cereu...    33   2.0  
UniRef50_Q4MYC2 Cluster: Ribosomal protein S4, putative; n=1; Th...    32   4.6  
UniRef50_A3QSH2 Cluster: Putative uncharacterized protein; n=2; ...    31   6.1  

>UniRef50_Q81Q57 Cluster: Permease, putative; n=8; Bacillus cereus
           group|Rep: Permease, putative - Bacillus anthracis
          Length = 408

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 27  SLVTVTSFNRKVSLYIFSLRISRVADTIKTFTF-W*LY 137
           SL   T+F+++  ++IF L ISR+ D+  TF   W  Y
Sbjct: 8   SLTVKTTFSKEYKIFIFGLLISRIGDSFYTFALPWIAY 45


>UniRef50_Q4MYC2 Cluster: Ribosomal protein S4, putative; n=1;
           Theileria parva|Rep: Ribosomal protein S4, putative -
           Theileria parva
          Length = 205

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 51  NRKVSLYIFSLRISRVADTIKTFTFW*LYCF*RTKLSMLTCIQI*VNFYAIENVKK--LA 224
           N K+   ++ ++  ++  +   F F  +Y F +   S L  +    N ++  N  K  ++
Sbjct: 45  NIKILKILYDVKDKKLKYSFNKFLFVNIYKFLKILKSRLDFVLFNNNLFSTINQSKQNIS 104

Query: 225 LKHISRNN*LARGSFVIVKNVDV 293
            KHI  NN +AR     VKN+D+
Sbjct: 105 HKHIFLNNTIARHPSYCVKNLDI 127


>UniRef50_A3QSH2 Cluster: Putative uncharacterized protein; n=2;
           root|Rep: Putative uncharacterized protein - Clostridium
           phage phiC2
          Length = 105

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 112 KLLLFGDYIVSNERSYLCLPAYKFEL 189
           +LL FG+YIV++E  +L +P  +F+L
Sbjct: 52  ELLAFGNYIVNSEEDFLAIPDNEFDL 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,793,077
Number of Sequences: 1657284
Number of extensions: 4490460
Number of successful extensions: 8236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8235
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)