BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1022 (395 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480... 29 1.0 02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 29 1.0 04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 28 3.1 08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 27 4.1 01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801 27 4.1 >10_08_0633 + 19446075-19446488,19446607-19446975,19447961-19448054, 19448137-19448174,19448770-19448916,19449580-19449679, 19449786-19450744,19451143-19451295 Length = 757 Score = 29.5 bits (63), Expect = 1.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 133 YIVSNERSYLCLPAYKFELTFTP 201 Y V+ +LCLP Y FEL + P Sbjct: 404 YFVAGFLKFLCLPKYNFELEYLP 426 >02_05_1056 - 33804717-33804871,33805352-33805418,33805508-33805576, 33806414-33806548,33806609-33806680,33807281-33807375, 33807778-33807859,33807949-33807999,33808107-33808187, 33808534-33808575,33808705-33808803,33809044-33809115, 33809166-33809270 Length = 374 Score = 29.5 bits (63), Expect = 1.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 295 CTSTFLTITKLPRANQLLRLMCFSASFLT 209 C FL + K+PR LR++ F FLT Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLT 132 >04_04_0666 + 27086568-27086975,27087073-27087477,27088542-27088635, 27088731-27088768,27088853-27088999,27089167-27089266, 27090001-27090953,27091512-27091569,27092904-27093022 Length = 773 Score = 27.9 bits (59), Expect = 3.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 133 YIVSNERSYLCLPAYKFELTFTPS 204 Y V+ + CLP+Y +EL + PS Sbjct: 414 YFVAGILKFFCLPSYFYELEYLPS 437 >08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505, 3012594-3012631,3012862-3013008,3013912-3014011, 3014615-3015042,3015234-3015389 Length = 446 Score = 27.5 bits (58), Expect = 4.1 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = +1 Query: 133 YIVSNERSYLCLPAYKFELTFTPSRTLKN 219 Y+++ +L LP Y+FE+ + P +N Sbjct: 269 YVIAGVLKFLSLPQYRFEVNYLPLSPRRN 297 >01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801 Length = 721 Score = 27.5 bits (58), Expect = 4.1 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -2 Query: 319 LINXSIKYCTSTFLTITKLPRANQLLRLMCFSASFLTFSMA*K-LTQICMQVSID 158 L+ I C S FLT+ L R L+ M S+ + + S A + L+ C+++ D Sbjct: 386 LVCSGITKCVSDFLTLQSLLRHRPKLKQMFHSSDYASSSYANRSLSSSCVEILDD 440 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,357,294 Number of Sequences: 37544 Number of extensions: 108550 Number of successful extensions: 157 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 684860244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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