Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1022
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480...    29   1.0  
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055...    29   1.0  
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886...    28   3.1  
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301...    27   4.1  
01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801           27   4.1  

>10_08_0633 +
           19446075-19446488,19446607-19446975,19447961-19448054,
           19448137-19448174,19448770-19448916,19449580-19449679,
           19449786-19450744,19451143-19451295
          Length = 757

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 133 YIVSNERSYLCLPAYKFELTFTP 201
           Y V+    +LCLP Y FEL + P
Sbjct: 404 YFVAGFLKFLCLPKYNFELEYLP 426


>02_05_1056 -
           33804717-33804871,33805352-33805418,33805508-33805576,
           33806414-33806548,33806609-33806680,33807281-33807375,
           33807778-33807859,33807949-33807999,33808107-33808187,
           33808534-33808575,33808705-33808803,33809044-33809115,
           33809166-33809270
          Length = 374

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 295 CTSTFLTITKLPRANQLLRLMCFSASFLT 209
           C   FL + K+PR    LR++ F   FLT
Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLT 132


>04_04_0666 +
           27086568-27086975,27087073-27087477,27088542-27088635,
           27088731-27088768,27088853-27088999,27089167-27089266,
           27090001-27090953,27091512-27091569,27092904-27093022
          Length = 773

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 133 YIVSNERSYLCLPAYKFELTFTPS 204
           Y V+    + CLP+Y +EL + PS
Sbjct: 414 YFVAGILKFFCLPSYFYELEYLPS 437


>08_01_0341 +
           3011238-3011246,3011824-3012192,3012412-3012505,
           3012594-3012631,3012862-3013008,3013912-3014011,
           3014615-3015042,3015234-3015389
          Length = 446

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 133 YIVSNERSYLCLPAYKFELTFTPSRTLKN 219
           Y+++    +L LP Y+FE+ + P    +N
Sbjct: 269 YVIAGVLKFLSLPQYRFEVNYLPLSPRRN 297


>01_01_0860 - 6705087-6705490,6706900-6708573,6709714-6709801
          Length = 721

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 319 LINXSIKYCTSTFLTITKLPRANQLLRLMCFSASFLTFSMA*K-LTQICMQVSID 158
           L+   I  C S FLT+  L R    L+ M  S+ + + S A + L+  C+++  D
Sbjct: 386 LVCSGITKCVSDFLTLQSLLRHRPKLKQMFHSSDYASSSYANRSLSSSCVEILDD 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,357,294
Number of Sequences: 37544
Number of extensions: 108550
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)