Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1022
         (395 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069586-1|AAL39731.1| 1916|Drosophila melanogaster LD32687p pro...    27   9.0  
AE014134-2071|AAF53101.1| 1916|Drosophila melanogaster CG6509-PB...    27   9.0  
AE014134-2070|AAF53102.1| 1916|Drosophila melanogaster CG6509-PA...    27   9.0  

>AY069586-1|AAL39731.1| 1916|Drosophila melanogaster LD32687p
           protein.
          Length = 1916

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -2

Query: 253 NQLLRLMCFSASFLTFSMA*KLTQICMQVSIDSFVR*KQYNHQKVKVLIVSATREIRRLK 74
           NQ L+++    S    S+  +L Q+  +   D+ ++     HQK+   +V A +EI RLK
Sbjct: 217 NQKLKVLLSQESKNVLSLTEELNQLLSEK--DNVLQ----EHQKMSDDLVLANKEIERLK 270

Query: 73  IYNETLRLNDVTVTRLSN 20
             +E L   ++ V +L+N
Sbjct: 271 -KDEQLARAEIKVLQLAN 287


>AE014134-2071|AAF53101.1| 1916|Drosophila melanogaster CG6509-PB,
           isoform B protein.
          Length = 1916

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -2

Query: 253 NQLLRLMCFSASFLTFSMA*KLTQICMQVSIDSFVR*KQYNHQKVKVLIVSATREIRRLK 74
           NQ L+++    S    S+  +L Q+  +   D+ ++     HQK+   +V A +EI RLK
Sbjct: 217 NQKLKVLLSQESKNVLSLTEELNQLLSEK--DNVLQ----EHQKMSDDLVLANKEIERLK 270

Query: 73  IYNETLRLNDVTVTRLSN 20
             +E L   ++ V +L+N
Sbjct: 271 -KDEQLARAEIKVLQLAN 287


>AE014134-2070|AAF53102.1| 1916|Drosophila melanogaster CG6509-PA,
           isoform A protein.
          Length = 1916

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 23/78 (29%), Positives = 41/78 (52%)
 Frame = -2

Query: 253 NQLLRLMCFSASFLTFSMA*KLTQICMQVSIDSFVR*KQYNHQKVKVLIVSATREIRRLK 74
           NQ L+++    S    S+  +L Q+  +   D+ ++     HQK+   +V A +EI RLK
Sbjct: 217 NQKLKVLLSQESKNVLSLTEELNQLLSEK--DNVLQ----EHQKMSDDLVLANKEIERLK 270

Query: 73  IYNETLRLNDVTVTRLSN 20
             +E L   ++ V +L+N
Sbjct: 271 -KDEQLARAEIKVLQLAN 287


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,098
Number of Sequences: 53049
Number of extensions: 201075
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1128794130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)