Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1022
         (395 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.96 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.96 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   9.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 SYLCLPAYKFELTFTPSRTL 213
           S LC+P Y   + FT S T+
Sbjct: 539 SMLCIPGYMIYIWFTTSGTI 558


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 SYLCLPAYKFELTFTPSRTL 213
           S LC+P Y   + FT S T+
Sbjct: 592 SMLCIPGYMIYIWFTTSGTI 611


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 193 KLTQICMQVSIDSFVR*KQYNHQKVKVLIVSATREIRR 80
           ++T +C+ +S+ + V        K+ +++    + IRR
Sbjct: 736 QITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRR 773


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -2

Query: 193 KLTQICMQVSIDSFVR*KQYNHQKVKVLIVSATREIRR 80
           ++T +C+ +S+ + V        K+ +++    + IRR
Sbjct: 826 QITTLCVAISLSATVTLVCLYSPKIYIILFQPDKNIRR 863


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 299 ILHIYIFDYHKTP 261
           +LHI+   YH TP
Sbjct: 3   VLHIHYQHYHITP 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,212
Number of Sequences: 438
Number of extensions: 1365
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)