Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1021
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18560.1 68418.m02194 AP2 domain-containing transcription fac...    30   1.2  
At4g31060.1 68417.m04410 AP2 domain-containing transcription fac...    29   3.7  
At1g71520.1 68414.m08267 AP2 domain-containing transcription fac...    27   8.5  
At1g28160.1 68414.m03456 ethylene-responsive element-binding fam...    27   8.5  
At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical...    27   8.5  

>At5g18560.1 68418.m02194 AP2 domain-containing transcription
           factor, putative AP2/EREBP-like transcription factor
           LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
          Length = 348

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 143 RPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 33
           R    A P R   +RRR WGR     R P    R WL
Sbjct: 45  RRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWL 81


>At4g31060.1 68417.m04410 AP2 domain-containing transcription
           factor, putative TINY, Arabidopsis thaliana, PID:E218696
          Length = 187

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 104 LRRRSWGRMCKRHRTPPCLRRTWL 33
           +R+RSWG+     R P   RR WL
Sbjct: 30  VRKRSWGKWVSEIRVPKTGRRIWL 53


>At1g71520.1 68414.m08267 AP2 domain-containing transcription
           factor, putative
          Length = 143

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 104 LRRRSWGRMCKRHRTPPCLRRTWL 33
           +RRR WG+     R P   +R WL
Sbjct: 17  IRRRKWGKWVSEIRVPGTRQRLWL 40


>At1g28160.1 68414.m03456 ethylene-responsive element-binding family
           protein contains similarity to ethylene-responsive
           element binding factor GI:8809573 from (Nicotiana
           sylvestris)
          Length = 245

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 104 LRRRSWGRMCKRHRTPPCLRRTWL 33
           +RRR WGR     R P    R WL
Sbjct: 42  VRRRPWGRYAAEIRNPTTKERYWL 65


>At1g03800.1 68414.m00361 ERF domain protein 10 (ERF10) identical to
           ERF domain protein 10 GI:11414990 from [Arabidopsis
           thaliana]
          Length = 245

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 104 LRRRSWGRMCKRHRTPPCLRRTWL 33
           +RRR WGR     R P   +R WL
Sbjct: 56  VRRRPWGRYAAEIRDPVKKKRVWL 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,806
Number of Sequences: 28952
Number of extensions: 117613
Number of successful extensions: 282
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)