Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1020
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54VR3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q231N9 Cluster: Putative uncharacterized protein; n=1; ...    32   9.7  

>UniRef50_Q54VR3 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 552

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 231 IYIHLFI--KTCLFVNNLKSNL-PTDIFIKGLQYFDCTKVA*SLVF*LMTCMKDWMKYKL 401
           +Y+  FI    C  +NN    + P+D FI    Y D       L+F +    KDW+K   
Sbjct: 11  LYVQKFIIKLLCRHINNNNKLIEPSDFFI---DYRDNEDEIKRLIFSIALVSKDWLKSLS 67

Query: 402 SLL*KKIEFNFLIKK 446
           + L   ++FNFL K+
Sbjct: 68  NYLNVAVDFNFLEKE 82


>UniRef50_Q231N9 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 249

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 469 LVFLNNFTFLIKKLNSIFFYKRDSLYFIQSFIQVIN*KTNDYATFVQSKYCSPLINISV 293
           LV  +    LIKK N+ +  K+DS Y++Q  I +I  + N Y +  Q+     LI I V
Sbjct: 46  LVAASTQLLLIKKDNNYYLLKKDS-YYLQGRIIIITYQENSYLSLTQNFLSQILIIIIV 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,786,024
Number of Sequences: 1657284
Number of extensions: 5044683
Number of successful extensions: 11773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11765
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)