BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1020 (624 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 28 4.7 >Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical protein T19C4.2 protein. Length = 313 Score = 28.3 bits (60), Expect = 4.7 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%) Frame = +3 Query: 243 LFIKTCLFVNN------LKSNLPTDIFIKGLQYFDCTKVA*SLVF*LMTCMKDWMKYKLS 404 LF TC F N L+ +LPT++ L YF SL+ + +C W K + Sbjct: 144 LFYSTCQFGNRSDDTFVLRCDLPTNLLFTPLIYFQGVCTLCSLICNIKSCSIVW-KASIE 202 Query: 405 LL*KKIEFNFLI 440 + +E NFLI Sbjct: 203 MK-ANMEANFLI 213 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,201,191 Number of Sequences: 27780 Number of extensions: 126679 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 256 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1363963182 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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