Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1018
         (601 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8ILC5 Cluster: Putative uncharacterized protein; n=2; ...    33   3.9  
UniRef50_A4RP82 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  

>UniRef50_Q8ILC5 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Plasmodium falciparum (isolate 3D7)
          Length = 2700

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +3

Query: 216 LFRNDRSKKLIIEPTSSSTNIYTNQIESMSKTKLFDCLM*CSKLPSRLLRSFLNKVTRMD 395
           +  +D+SK + I  T   TN YTN I S+SK  L + +   +K       ++ N+ T   
Sbjct: 654 IHNSDKSKNIYINNTKEFTNNYTNSILSISKNNLNNQMSYLNKKMITNEGNYQNRATSHS 713

Query: 396 --SVEL*YAYILFYTVFNYCNTNVFLHWQHF 482
             + E  Y     + +   CN  +  H+ HF
Sbjct: 714 RYNYEKIYTRYTNFIIGKNCNM-MNTHFNHF 743


>UniRef50_A4RP82 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 734

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +3

Query: 135 HAVYISFITLFNFSVESKWSRGD*LKPLFRNDRSKKLIIEPTSSSTNIYTNQIESMSKTK 314
           HA  +  I   N  +E   S      P+   +      +    S +++    ++ M  T 
Sbjct: 32  HAPSLDAIATQNTEIEDSRSSSSTNSPVPNENEESDFFLGANDSQSSLGVPNLQDMQVTD 91

Query: 315 LFDCLM*CSKLPSRLLRSFLNKVT 386
            +DCL   +KLP+ +L S  ++++
Sbjct: 92  DYDCLAAVNKLPNEILISIFSRLS 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,745,821
Number of Sequences: 1657284
Number of extensions: 8744430
Number of successful extensions: 19883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19880
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)