Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1018
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   3.7  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    25   6.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   8.5  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   8.5  

>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 207  LKPLFRNDRSKKLIIEPTSSSTNIYTNQIESMSKTKLFDCLM*CSK 344
            L+ +F  +R +   ++P   +T    N I S+  T +F   + CS+
Sbjct: 972  LQTVFIEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSE 1017


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 260 KLIYEHLHKPNRIYEQNEI 316
           KL+YE+L K NR Y   ++
Sbjct: 19  KLVYEYLRKTNRPYSATDV 37


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
 Frame = +3

Query: 84  INKPHICRPTTANMYCQHAVYISFITLFNFSVESKWSRGD-*LKPLFRNDRSKKLIIEPT 260
           I+ PH   P+ + M   +  ++ F   FN+ ++   SR        + N   +  +   T
Sbjct: 300 IHNPHPTHPSASAMNYMNPCFLEFHAFFNYPMKFARSRSAYSTSANYSNTPPRNTVTPST 359

Query: 261 SSSTNIYTNQIESMSKTKLFDCLM*CSKLPSRLLRSFLNKVTRMD 395
           + S+ +  N   S +   L    +       R L   +    R+D
Sbjct: 360 ARSSTLSQNPSSSSNSIPLISRNLRDFSFFKRCLEEDIEPTLRLD 404


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 188 VESWRLIKTFISKRSLQEINNRTNKLIYEHLHKPNRIYEQNEII 319
           + +W  +K  +   ++  +   TN +  EHL   +RIY+ +E I
Sbjct: 140 IRAWAPLKPILLAPAMNTLM-WTNPITQEHLSAISRIYKNSEFI 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,457
Number of Sequences: 5004
Number of extensions: 41904
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)