Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1018
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    30   1.1  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    30   1.1  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    30   1.1  
AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 406 NSTESIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 290
           N+  ++   +F + L+++L NL  +     NF LLID++
Sbjct: 174 NTFPNVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 406 NSTESIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 290
           N+  ++   +F + L+++L NL  +     NF LLID++
Sbjct: 174 NTFPNVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 406 NSTESIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 290
           N+  ++   +F + L+++L NL  +     NF LLID++
Sbjct: 174 NTFPNVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical
           protein T21D12.9b protein.
          Length = 569

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 409 NTPIYYFIPFLIIATLTYFYTG 474
           N+P+Y F+PFL+ +    FY G
Sbjct: 271 NSPVYPFVPFLMTSLQFVFYVG 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,484,396
Number of Sequences: 27780
Number of extensions: 219851
Number of successful extensions: 527
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)