Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1017
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)               89   1e-18
SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3)                       28   3.1  
SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3)                       28   3.1  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   4.0  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   7.1  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                26   9.3  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 47/51 (92%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL+EL+ K
Sbjct: 41  LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 258 KGLIKQVVQHHGQVIYTRATKGDD 329
           KGLIK+V +HH Q+IYTRATKG D
Sbjct: 91  KGLIKEVSKHHSQLIYTRATKGAD 114


>SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3)
          Length = 84

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 296 LPMVLDYLFDEAFFLSSMSALLAREPRTFNLSD 198
           LP + D+L+D    ++S  +LLA   R  ++SD
Sbjct: 51  LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83


>SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3)
          Length = 84

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 296 LPMVLDYLFDEAFFLSSMSALLAREPRTFNLSD 198
           LP + D+L+D    ++S  +LLA   R  ++SD
Sbjct: 51  LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 164 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 81
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 17  NSLKKHRRRRKDPVAAKPRRRSGPK 91
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   RRLRPNSLKKHRRRRKDPVAAKPRRRSG 85
           R+ RP   +++RR RK P+    R +SG
Sbjct: 556 RKRRPRLGRRNRRLRKTPIVCTKRGKSG 583


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   RRLRPNSLKKHRRRRKDPVAAKPRRR 79
           RR  P      RRRRK P  + PRRR
Sbjct: 909 RRDSPTPSPPPRRRRKSPSPSPPRRR 934


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 14  PNSLKKHRRRRKDPVAAKPRRRSGPKEK 97
           PN+LK+ +RR  +    KP  RS  K +
Sbjct: 67  PNALKREKRRTTNSANRKPANRSPSKRE 94


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 2   RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 97
           R L   + K HR RR+  +A +PR  +GP EK
Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,923,030
Number of Sequences: 59808
Number of extensions: 257155
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)