BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1017 (388 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) 89 1e-18 SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3) 28 3.1 SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3) 28 3.1 SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 27 4.0 SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 27 7.1 SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1 SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3 SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 26 9.3 >SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0) Length = 115 Score = 89.0 bits (211), Expect = 1e-18 Identities = 41/51 (80%), Positives = 47/51 (92%) Frame = +1 Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261 LNN VLFDK TY+KLYKEVP Y+LITP+VVSERLK+RGSLARRAL+EL+ K Sbjct: 41 LNNLVLFDKATYDKLYKEVPSYRLITPSVVSERLKIRGSLARRALLELQSK 91 Score = 42.7 bits (96), Expect = 1e-04 Identities = 18/24 (75%), Positives = 21/24 (87%) Frame = +3 Query: 258 KGLIKQVVQHHGQVIYTRATKGDD 329 KGLIK+V +HH Q+IYTRATKG D Sbjct: 91 KGLIKEVSKHHSQLIYTRATKGAD 114 >SB_23138| Best HMM Match : KA1 (HMM E-Value=6.3) Length = 84 Score = 27.9 bits (59), Expect = 3.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 296 LPMVLDYLFDEAFFLSSMSALLAREPRTFNLSD 198 LP + D+L+D ++S +LLA R ++SD Sbjct: 51 LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83 >SB_10992| Best HMM Match : KA1 (HMM E-Value=6.3) Length = 84 Score = 27.9 bits (59), Expect = 3.1 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = -3 Query: 296 LPMVLDYLFDEAFFLSSMSALLAREPRTFNLSD 198 LP + D+L+D ++S +LLA R ++SD Sbjct: 51 LPSIADFLWDHMAVIASSLSLLAIRARVIDMSD 83 >SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) Length = 1244 Score = 27.5 bits (58), Expect = 4.0 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 164 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 81 +SL+ G+SN+ WL N S T P++H Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277 >SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 594 Score = 26.6 bits (56), Expect = 7.1 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 17 NSLKKHRRRRKDPVAAKPRRRSGPK 91 N KH ++K PV P+R GPK Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328 >SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) Length = 2565 Score = 26.6 bits (56), Expect = 7.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRRSG 85 R+ RP +++RR RK P+ R +SG Sbjct: 556 RKRRPRLGRRNRRLRKTPIVCTKRGKSG 583 >SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1272 Score = 26.6 bits (56), Expect = 7.1 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +2 Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRR 79 RR P RRRRK P + PRRR Sbjct: 909 RRDSPTPSPPPRRRRKSPSPSPPRRR 934 >SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1453 Score = 26.2 bits (55), Expect = 9.3 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +2 Query: 14 PNSLKKHRRRRKDPVAAKPRRRSGPKEK 97 PN+LK+ +RR + KP RS K + Sbjct: 67 PNALKREKRRTTNSANRKPANRSPSKRE 94 >SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) Length = 325 Score = 26.2 bits (55), Expect = 9.3 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 2 RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 97 R L + K HR RR+ +A +PR +GP EK Sbjct: 190 RNLAGPAEKPHRSRRETQLA-QPRNPTGPAEK 220 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,923,030 Number of Sequences: 59808 Number of extensions: 257155 Number of successful extensions: 732 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 624 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 724 length of database: 16,821,457 effective HSP length: 74 effective length of database: 12,395,665 effective search space used: 669365910 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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