Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1017
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    75   1e-14
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    28   2.6  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    28   2.6  
AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine r...    27   3.5  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   3.5  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   6.1  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   6.1  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   6.1  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 75.4 bits (177), Expect = 1e-14
 Identities = 37/51 (72%), Positives = 42/51 (82%)
 Frame = +1

Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ K
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 258 KGLIKQVVQHHGQVIYTRATKGDDPV 335
           KGL+K VV HHGQV+YTRATK  D +
Sbjct: 90  KGLVKCVVHHHGQVVYTRATKEADVI 115


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 2   RRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 97
           RR  P+  K    RR+   AA PRRR  P+ +
Sbjct: 466 RRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRR 497


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 338 CDWIIALGRTRVDHLPMVL-DYLFDEAFF--LSSMSALLAREPRTFNLSDTTAGVISLYC 168
           C   +++  +++ H   +L  +  DE  F  ++S+ AL A +    NL  TTA  + LY 
Sbjct: 283 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 342

Query: 167 GTSLYSFSYVGLSNNT 120
             S    S + + NN+
Sbjct: 343 SVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -3

Query: 338 CDWIIALGRTRVDHLPMVL-DYLFDEAFF--LSSMSALLAREPRTFNLSDTTAGVISLYC 168
           C   +++  +++ H   +L  +  DE  F  ++S+ AL A +    NL  TTA  + LY 
Sbjct: 198 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 257

Query: 167 GTSLYSFSYVGLSNNT 120
             S    S + + NN+
Sbjct: 258 SVSTGPQSTMAMFNNS 273


>AF016449-12|AAG24004.2|  365|Caenorhabditis elegans Serpentine
           receptor, class t protein71 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = -3

Query: 344 SLCDWIIALGRTRVDHLPMVLDYLFDEAFFLSSMSALLAREPRTFNLSDTTAGVISLYCG 165
           S+C  ++A+ R  V+  P    +  +  F L+    L   +P T N         +LYC 
Sbjct: 118 SVCSILLAIERC-VEINP---HFPLEMLFLLNFQPELYECQPDTINNIVLVLCTSTLYCY 173

Query: 164 TSLYSFSYVGLSNNTWLFNLSR 99
            S +     G S ++WL+   R
Sbjct: 174 ISYHLLFNFGYSTSSWLYKSKR 195


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 248 SMSALLAREPRTFNLSDTTAGVISLYCG 165
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 115 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 228
           N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 139 TYEKLYKEVPQYKLITP-AVVSERLKVRGSLARRALIELRKKAS 267
           TYE + K   ++K ITP AV  +   +    ARR LI +R+  S
Sbjct: 184 TYEMIKKVFSKHKTITPFAVPLQNTTLSKLQARRDLIMMRQTVS 227


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 35  RRRRKDPVAAKPRRRSGP 88
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 35  RRRRKDPVAAKPRRRSGP 88
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -1

Query: 166 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 47
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -3

Query: 236 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 57
           ++ R+P ++    ++     + C  S   FS+V    +       R   L  F+F   PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398

Query: 56  PDPS 45
           P PS
Sbjct: 399 PVPS 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,680
Number of Sequences: 27780
Number of extensions: 183542
Number of successful extensions: 581
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)