BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1017 (388 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 71 4e-13 At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 69 1e-12 At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 69 1e-12 At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 68 3e-12 At5g64950.1 68418.m08170 mitochondrial transcription termination... 31 0.36 At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 29 1.4 At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 28 2.5 At5g44415.1 68418.m05439 hypothetical protein contains Pfam prof... 27 4.4 At4g09370.1 68417.m01546 hypothetical protein contains Pfam prof... 27 4.4 At2g23710.1 68415.m02831 hypothetical protein contains Pfam prof... 27 4.4 At5g37390.1 68418.m04498 hypothetical protein contains Pfam prof... 27 5.8 At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 5.8 At1g24706.1 68414.m03104 expressed protein 27 5.8 At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla... 26 7.6 At1g48180.1 68414.m05378 expressed protein ; expression supporte... 26 7.6 >At4g34555.1 68417.m04910 40S ribosomal protein S25, putative Length = 108 Score = 70.5 bits (165), Expect = 4e-13 Identities = 30/53 (56%), Positives = 43/53 (81%) Frame = +1 Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKKAS 267 +NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLARRA+ EL K + Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGT 89 Score = 29.1 bits (62), Expect = 1.1 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +3 Query: 258 KGLIKQVVQHHGQVIYTRATKG 323 KG I+ V H Q IYTRAT G Sbjct: 87 KGTIRMVSAHSSQQIYTRATHG 108 >At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribosomal protein S25, Lycopersicon esculentum, PIR2:S40089 Length = 108 Score = 68.9 bits (161), Expect = 1e-12 Identities = 29/51 (56%), Positives = 42/51 (82%) Frame = +1 Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261 +NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL K Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87 Score = 28.7 bits (61), Expect = 1.4 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +3 Query: 258 KGLIKQVVQHHGQVIYTRAT 317 KG+I+ V H Q IYTRAT Sbjct: 87 KGVIRMVAAHSSQQIYTRAT 106 >At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) Length = 108 Score = 68.5 bits (160), Expect = 1e-12 Identities = 29/51 (56%), Positives = 42/51 (82%) Frame = +1 Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKK 261 +NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSLARRA+ EL K Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAK 87 Score = 29.1 bits (62), Expect = 1.1 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +3 Query: 258 KGLIKQVVQHHGQVIYTRAT 317 KGLI+ V H Q IYTRAT Sbjct: 87 KGLIRMVSAHSSQQIYTRAT 106 >At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) Length = 125 Score = 67.7 bits (158), Expect = 3e-12 Identities = 28/53 (52%), Positives = 43/53 (81%) Frame = +1 Query: 109 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELRKKAS 267 +NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSLAR+A+ +L K + Sbjct: 53 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGT 105 >At5g64950.1 68418.m08170 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 391 Score = 30.7 bits (66), Expect = 0.36 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -3 Query: 344 SLCDWIIALGRTRVDHLPMVLDYLFDEAFFLSSMSALLAREPRTFNLSD 198 S C W++ + LP + YL S +++LL R+PR FNLS+ Sbjct: 166 SRCGWLLLSRDPNLFLLPNI-SYLETCGIVGSQLASLLRRQPRIFNLSE 213 >At1g14500.1 68414.m01719 ankyrin repeat family protein contains Pfam domain, PF00023: Ankyrin repeat Length = 436 Score = 28.7 bits (61), Expect = 1.4 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -3 Query: 173 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 33 +C LY+F + + + TW F + + + + +A+ P+P F C Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390 >At2g17250.1 68415.m01992 expressed protein weak similarity to Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176) [Saccharomyces cerevisiae] Length = 577 Score = 27.9 bits (59), Expect = 2.5 Identities = 13/47 (27%), Positives = 29/47 (61%) Frame = +1 Query: 112 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 252 +++ + +KPT +K E L++PA +S+R+K++ + A + + L Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291 >At5g44415.1 68418.m05439 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 611 Score = 27.1 bits (57), Expect = 4.4 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 215 SEVPWREEHSSNLGKRPHQTGSPTPWAGDLHACDQG 322 +E+P R+E + L + G P GD A D G Sbjct: 31 AEIPQRDEEGAELLTTEEEAGEIQPTTGDCDAADLG 66 >At4g09370.1 68417.m01546 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 666 Score = 27.1 bits (57), Expect = 4.4 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 215 SEVPWREEHSSNLGKRPHQTGSPTPWAGDLHACDQG 322 +E+P R+E + L + G P GD A D G Sbjct: 31 AEIPRRDEEGAELFTTEEEAGEIQPTTGDCDAADLG 66 >At2g23710.1 68415.m02831 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287; this may be a pseudogene; the protein appears slightly truncated on the 3' end due to intervening stop codon. Length = 592 Score = 27.1 bits (57), Expect = 4.4 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +2 Query: 215 SEVPWREEHSSNLGKRPHQTGSPTPWAGDLHACDQG 322 +E+P R+E + L + G P GD A D G Sbjct: 31 AEIPQRDEEGAELLTTEEEAGEIQPTTGDCDAADLG 66 >At5g37390.1 68418.m04498 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 628 Score = 26.6 bits (56), Expect = 5.8 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = +2 Query: 215 SEVPWREEHSSNLGKRPHQTGSPTPWAGDLHACDQGR*SSRINYD 349 +E+P R+E L + G P GD A D G S+ + +D Sbjct: 31 AEIPQRDEEGVELLTTEEEAGEIQPTTGDCDAADLGN-SNAVAWD 74 >At2g23170.1 68415.m02768 auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter Length = 595 Score = 26.6 bits (56), Expect = 5.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -2 Query: 147 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 55 ++CG + +H V++L F+ G L +GF T Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243 >At1g24706.1 68414.m03104 expressed protein Length = 1781 Score = 26.6 bits (56), Expect = 5.8 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 110 NLSRTFPLDHFFFLALPPPDP 48 +L ++ P DHF LPPP P Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582 >At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole biosynthetic enzyme, chloroplast precursor (ARA6) {Arabidopsis thaliana} Length = 349 Score = 26.2 bits (55), Expect = 7.6 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%) Frame = -3 Query: 275 LFDEAFFLSSMSAL---LAREPRTFNLSDTTAG 186 LFD +F S++SA + +PR+F++ TTAG Sbjct: 18 LFDSSFHGSAISAAPISIGLKPRSFSVRATTAG 50 >At1g48180.1 68414.m05378 expressed protein ; expression supported by MPSS Length = 239 Score = 26.2 bits (55), Expect = 7.6 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -3 Query: 206 LSDTTAGVISLYCGTSLYSFSYVGL 132 L + + +YCGTS SYVGL Sbjct: 149 LQQDASAITGIYCGTSGEPASYVGL 173 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,274,358 Number of Sequences: 28952 Number of extensions: 168900 Number of successful extensions: 546 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 546 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 547638520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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