Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1016
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0754 + 24933860-24934031,24936035-24936104,24936192-249363... 39 0.001
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 36 0.009
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 28 2.3
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 28 3.1
08_02_0498 - 17815189-17815249,17815852-17815938,17816532-178165... 27 4.1
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 4.1
06_03_1199 - 28339942-28340703 27 5.4
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 27 5.4
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 5.4
08_01_0272 + 2200061-2200078,2200835-2202076,2202201-2202698,220... 27 7.1
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 27 7.1
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 26 9.4
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853... 26 9.4
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601... 26 9.4
>01_05_0754 +
24933860-24934031,24936035-24936104,24936192-24936316,
24936539-24936677,24936926-24937022,24937105-24937170,
24937478-24937616,24938149-24938258,24938355-24938459,
24938579-24938686
Length = 376
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEK 171
G+ + L I E+S +L TKVEI+L K E +W+ LD+ + +PK V +K
Sbjct: 210 GEEPYHFQPRLFSKIIPEKSRYQVLSTKVEIRLAKAEQITWTSLDYDK-KPKAVPQK 265
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 36.3 bits (80), Expect = 0.009
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 4 DAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKL 132
D +ELDLEL +N+E S A++ + +KK E W +L
Sbjct: 48 DTPYELDLELFDAVNVEESKAAVAARSICYLIKKAESKWWPRL 90
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.3 bits (60), Expect = 2.3
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 112 PGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVE 228
P W +L+ K E ++ + +++ DD D++S+E
Sbjct: 443 PTPWGELEVYEYNGKYTEHRAAIDSSSVADDDTDVTSIE 481
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +1
Query: 88 EIKLKKGEPGSWSKLDFPRT-EPKKVEEK---STVQVNTMEDDSVDLSSVE 228
E K+++ EP S+L PRT EP + ++ S + ED++V LSSV+
Sbjct: 228 EPKVEEREPSKASELKAPRTEEPSRSGDRIFSSPLARKLAEDNNVPLSSVK 278
>08_02_0498 -
17815189-17815249,17815852-17815938,17816532-17816587,
17816625-17816721,17817085-17817152
Length = 122
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 142 RTEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNMP-SIGFSLEMQF 288
++E + EE + V+T+E+D+ LSSV ++ V+ P + S + Q+
Sbjct: 50 QSEASQFEEYCVLSVDTLENDAFSLSSVWIYSVCTVSHPQDLEISQQQQY 99
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 103 KGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNM 255
+GE G++ K V+ KS + N ME+D+ + E +T ++ ++
Sbjct: 802 EGEEGTFLKFTIKHLMALDVKLKSQLNPNGMEEDAAENDRAEDVTTDEASV 852
>06_03_1199 - 28339942-28340703
Length = 253
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 100 KKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDD 204
KK + K+ P+ EPKKV EK ++ + DD
Sbjct: 4 KKRQNKRNGKVSKPQAEPKKVTEKQEDLISKLPDD 38
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 27.1 bits (57), Expect = 5.4
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 AAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQV 186
A E+D E+ N+ + +ML + + I+L +GE SK + + E T V
Sbjct: 124 ALTEMDTEIISQSNLTEINTAMLSSGITIELSEGERSIQSK-QIQNMKQSILTEYETTFV 182
Query: 187 NT-MEDDSVDLSSVETITLNKVNMPSIGFSLE 279
N+ + + V +S+ L++ N IG E
Sbjct: 183 NSGITGNEVGISN----ALDEPNTDHIGLGAE 210
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.1 bits (57), Expect = 5.4
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 88 EIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTME--DDSVDLSSVETI 234
E +K+ PG +S L R + KK +EKST + + + D SV + ++E I
Sbjct: 639 EPPIKQKRPGYFSSLCGGRKKTKKSKEKSTEKKKSHKHVDSSVPVFNLEDI 689
>08_01_0272 +
2200061-2200078,2200835-2202076,2202201-2202698,
2203316-2203345
Length = 595
Score = 26.6 bits (56), Expect = 7.1
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -3
Query: 302 SKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFF-GSVLGKSSL 126
S M+ IS E L + L V++S ++ S VL W + +FF LG SS
Sbjct: 399 STMTHVDISHELKKLVLDKLLQVLISDSIQRAGFMSAVLAWHIATDISFFHEDELGCSSP 458
Query: 125 DHEPGSPFFNFISTL 81
P ++ L
Sbjct: 459 SRGPSRELSKYVMYL 473
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 92 ISTLVPNIEAELLSILITPLSSRSN 18
+STL PNI+ E LS+ P +S N
Sbjct: 175 VSTLAPNIQEEKLSLEPLPKASNKN 199
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 187 NTMEDDSVDLSSVETITL-NKVNMPSIGFSLEMQFC 291
+++ED V L L +++N+P IGFS+ + FC
Sbjct: 541 SSVEDTQVPLLPKTRKRLRDRINLPEIGFSVFLIFC 576
>03_05_0999 -
29583959-29584711,29584797-29585021,29585163-29585360,
29585472-29586056
Length = 586
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -3
Query: 176 VDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVPNIEAELLSIL-ITPLSSR 24
V + T FG++ S +PG+ F +++S ++P + A LSIL ++ +++R
Sbjct: 290 VALAVTTFGTIAIMSGFFLKPGATFDDYVSDVLP-LFAGFLSILGVSEIATR 340
>03_03_0137 -
14759337-14759508,14759616-14759813,14759917-14760116,
14760197-14760310,14760386-14760572,14760984-14761225,
14762326-14762424,14762505-14762836,14762931-14763039
Length = 550
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 238 LNKVNMPSIGFSLEMQFC 291
+N+VN+P IG S+ + FC
Sbjct: 492 INRVNLPEIGLSVFLIFC 509
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,423
Number of Sequences: 37544
Number of extensions: 169972
Number of successful extensions: 518
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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