Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1016
(394 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27) 29 1.8
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 29 1.8
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_2615| Best HMM Match : ERM (HMM E-Value=0.76) 27 5.4
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023) 27 5.4
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 27 7.2
SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 27 7.2
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074) 27 7.2
SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06) 26 9.5
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 26 9.5
SB_51520| Best HMM Match : Flavoprotein (HMM E-Value=1.4) 26 9.5
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 26 9.5
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12) 26 9.5
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 26 9.5
>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1994
Score = 31.9 bits (69), Expect = 0.19
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -3
Query: 212 STESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVPNIE-AELLSILITP 36
S +S S++ TV SST +GS++ S P + F + NI +E L + +TP
Sbjct: 17 SAKSQSVIEVTTVISSSTDYGSIITPSPSSEGPKTEDSTFATETPRNITVSETLLMELTP 76
Query: 35 LSSRSNSKAAS 3
++S S + + S
Sbjct: 77 IASVSPTNSYS 87
>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
Length = 396
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 28 ELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDS 207
ELR +INIE + ++ KLK E S S+ +T P K +E + N + S
Sbjct: 208 ELRNLINIECLESLGFERNIKGKLKPTEGESSSQPSSAKTSPSKKQEPPALG-NKRQSSS 266
Query: 208 VDLSS 222
+ +S
Sbjct: 267 ISYAS 271
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/77 (23%), Positives = 41/77 (53%)
Frame = +1
Query: 4 DAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQ 183
DA D E V+ + + ++ + E+++++GE LD P + +KVEE+ ++
Sbjct: 362 DAQQATDSESCPVLASDTDAEALSVEEAELEVEEGEELQSPTLDEPNIKQEKVEEQ--LE 419
Query: 184 VNTMEDDSVDLSSVETI 234
+++++DL +T+
Sbjct: 420 SVQSQEEAMDLDEKKTV 436
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.1 bits (57), Expect = 5.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 79 TKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDL--SSVETITLNKVN 252
TKV K GEPG+ + P + + STV N+ DD DL S +E + + +
Sbjct: 451 TKVT-KAPPGEPGASGRPGIPGRPGTQGAKGSTVSNNSYIDDCKDLLASFIEIVCIWQ-G 508
Query: 253 MPSIG 267
+P IG
Sbjct: 509 LPGIG 513
>SB_2615| Best HMM Match : ERM (HMM E-Value=0.76)
Length = 253
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 136 FPRTEPKKVEEKSTVQVNTMEDDSVDLSSVETI 234
F E KK+ K T N + SVD+ SVE +
Sbjct: 11 FGLDENKKIRNKFTFPANKLNITSVDIQSVEPV 43
>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
Length = 906
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 TEPKKVEEKSTVQVNTMEDDSVDLSS--VETITLNKVNMPSIGFSLEMQFCDIL 300
T+ K EK + + E S +L S +E L KV++PS+G ++ D+L
Sbjct: 462 TDQSKTLEKQITE-DVREGQSTELCSAPLEIKALPKVDVPSMGMEVDRNMKDVL 514
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 118 SWSKLDFPRT-EPKKVEEKSTVQVNTMEDDSVDLSSVETIT--LNKVNMPSIGFSLEMQF 288
SWS+ R +PK + + T+E+ ++DL + E + V+ PS L
Sbjct: 730 SWSRSSLERRKQPKPLIRDQLEPIKTLEERTMDLENEERVNGLPRVVSAPSTSSDLNSNQ 789
Query: 289 CDILLMNALDIL 324
L N+LD L
Sbjct: 790 RVKSLENSLDFL 801
>SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 130 LDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVE 228
L+FP +P+ ++++TVQ + ED S S++E
Sbjct: 31 LEFPFLKPEHRKQRTTVQRDVKEDASSYRSAIE 63
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 109 EPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDD---SVDLSSVETI 234
EP + ++FPRT+P + + ++ ++DD S D S V +I
Sbjct: 532 EPACGNDIEFPRTDPDHIPLSKSEYLDGLKDDVFTSDDDSDVSSI 576
>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
Length = 1087
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 233 IVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPG 111
+ TE T ++ L W+ D+S+ GS G L +EPG
Sbjct: 592 VTVTEKVDTGATITSLCWSTDYSTLAIGSSKGSMKL-YEPG 631
>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
Length = 798
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 121 WSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS 219
++++D P E VEEK+ + T E +++DLS
Sbjct: 197 FAEVDSPAEEQSPVEEKTPISEATDEINNLDLS 229
>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 456
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 121 WSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVET 231
W ++D P TE ++ + Q+ DD D++ ET
Sbjct: 384 WRRID-PETEKGWIDNREIQQIEVPFDDETDIAREET 419
>SB_51520| Best HMM Match : Flavoprotein (HMM E-Value=1.4)
Length = 215
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +1
Query: 106 GEPGSW--SKLDFPRT-EPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNMPSIGFSL 276
GE W S L P +PK EK + ED + L V +TLN+ ++ L
Sbjct: 14 GEDFDWISSTLAIPENADPKVWLEKQIEEDENAEDGDIMLQDVSPVTLNEEQRSTVSLIL 73
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 26.2 bits (55), Expect = 9.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTE----PKKVEEKSTVQVNTMEDDSVDL 216
I+ S+S KV+ KK GS S+ D E PKK +K+ + ++ +DDS
Sbjct: 16 IDDDSSSDEEVKVKKDTKKATKGSSSEDDSSSDEEEVKPKKDAKKAATEDSSSDDDS--- 72
Query: 217 SSVETITLNK 246
SS E + + K
Sbjct: 73 SSDEEVKVKK 82
>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
Length = 469
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 55 RSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVETI 234
+ A + K + K KKG S+ ++F KK V T EDD DL V
Sbjct: 71 KEKAMQVKKKDQGKEKKGPATSYMNMEFLEKTRKKQPLPKRVGKRTEEDD--DLVVVNFG 128
Query: 235 TLNKVNMPSI 264
+N NM ++
Sbjct: 129 AVNTSNMETL 138
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 148 EPKKVEEKSTVQVNTMEDDSVDLS 219
E +K EKST VNT +D S+DL+
Sbjct: 2440 EFQKEPEKSTFDVNTGDDVSLDLT 2463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,735,754
Number of Sequences: 59808
Number of extensions: 199857
Number of successful extensions: 616
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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