BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1016 (394 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BC108901-1|AAI08902.1| 329|Homo sapiens ITGB1BP2 protein protein. 59 4e-09 AF140690-1|AAF01676.1| 347|Homo sapiens melusin protein. 59 4e-09 AF110225-1|AAL36913.1| 347|Homo sapiens MSTP015 protein. 59 4e-09 BC072461-1|AAH72461.1| 332|Homo sapiens cysteine and histidine-... 52 9e-07 BC017789-1|AAH17789.1| 116|Homo sapiens CHORDC1 protein protein. 52 9e-07 AF192466-1|AAF18437.1| 332|Homo sapiens CHORD containing protei... 51 1e-06 AF123249-1|AAG43237.1| 313|Homo sapiens protein ( Homo sapiens ... 51 1e-06 BT009798-1|AAP88800.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007 BC000911-1|AAH00911.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007 AY321358-1|AAQ76039.1| 365|Homo sapiens SUGT1B protein. 39 0.007 AY271314-1|AAQ01749.1| 365|Homo sapiens SGT1B protein protein. 39 0.007 AL139089-2|CAI17072.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007 AL139089-1|CAM23909.1| 365|Homo sapiens SGT1, suppressor of G2 ... 39 0.007 AJ344097-1|CAC51433.1| 333|Homo sapiens putative 40-6-3 protein... 39 0.007 AF132856-1|AAD30062.1| 333|Homo sapiens suppressor of G2 allele... 39 0.007 X86810-1|CAA60500.1| 254|Homo sapiens emerin protein. 29 7.2 X82434-1|CAA57817.1| 254|Homo sapiens emerin protein. 29 7.2 L44140-2|AAA92645.1| 254|Homo sapiens emerin protein. 29 7.2 D64111-1|BAA10972.1| 254|Homo sapiens emerin protein. 29 7.2 CR536536-1|CAG38773.1| 254|Homo sapiens EMD protein. 29 7.2 BX936346-5|CAI43228.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2 BX936346-4|CAI43229.1| 219|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2 BT007401-1|AAP36065.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2 BC000738-1|AAH00738.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2 >BC108901-1|AAI08902.1| 329|Homo sapiens ITGB1BP2 protein protein. Length = 329 Score = 59.3 bits (137), Expect = 4e-09 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180 G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK + Sbjct: 242 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 301 Query: 181 QVNTMEDDSVD 213 +++ E D D Sbjct: 302 EMDEEESDDSD 312 >AF140690-1|AAF01676.1| 347|Homo sapiens melusin protein. Length = 347 Score = 59.3 bits (137), Expect = 4e-09 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180 G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK + Sbjct: 260 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 319 Query: 181 QVNTMEDDSVD 213 +++ E D D Sbjct: 320 EMDEEESDDSD 330 >AF110225-1|AAL36913.1| 347|Homo sapiens MSTP015 protein. Length = 347 Score = 59.3 bits (137), Expect = 4e-09 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180 G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK + Sbjct: 260 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 319 Query: 181 QVNTMEDDSVD 213 +++ E D D Sbjct: 320 EMDEEESDDSD 330 >BC072461-1|AAH72461.1| 332|Homo sapiens cysteine and histidine-rich domain (CHORD)-containing 1 protein. Length = 332 Score = 51.6 bits (118), Expect = 9e-07 Identities = 20/59 (33%), Positives = 40/59 (67%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ +T Sbjct: 272 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDAT 330 >BC017789-1|AAH17789.1| 116|Homo sapiens CHORDC1 protein protein. Length = 116 Score = 51.6 bits (118), Expect = 9e-07 Identities = 20/59 (33%), Positives = 40/59 (67%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ +T Sbjct: 56 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDAT 114 >AF192466-1|AAF18437.1| 332|Homo sapiens CHORD containing protein-1 protein. Length = 332 Score = 51.2 bits (117), Expect = 1e-06 Identities = 20/59 (33%), Positives = 39/59 (66%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ T Sbjct: 272 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDDT 330 >AF123249-1|AAG43237.1| 313|Homo sapiens protein ( Homo sapiens chymotrypsin-like protein mRNA, complete cds. ). Length = 313 Score = 51.2 bits (117), Expect = 1e-06 Identities = 20/59 (33%), Positives = 39/59 (66%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ T Sbjct: 253 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDDT 311 >BT009798-1|AAP88800.1| 333|Homo sapiens SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein. Length = 333 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226 >BC000911-1|AAH00911.1| 333|Homo sapiens SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein. Length = 333 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226 >AY321358-1|AAQ76039.1| 365|Homo sapiens SUGT1B protein. Length = 365 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258 >AY271314-1|AAQ01749.1| 365|Homo sapiens SGT1B protein protein. Length = 365 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258 >AL139089-2|CAI17072.1| 333|Homo sapiens SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein. Length = 333 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226 >AL139089-1|CAM23909.1| 365|Homo sapiens SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) protein. Length = 365 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258 >AJ344097-1|CAC51433.1| 333|Homo sapiens putative 40-6-3 protein protein. Length = 333 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226 >AF132856-1|AAD30062.1| 333|Homo sapiens suppressor of G2 allele of skp1 homolog protein. Length = 333 Score = 38.7 bits (86), Expect = 0.007 Identities = 20/41 (48%), Positives = 26/41 (63%) Frame = +1 Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135 + L LEL I E+S+ +L TK+EIKLKK E W KL+ Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226 >X86810-1|CAA60500.1| 254|Homo sapiens emerin protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >X82434-1|CAA57817.1| 254|Homo sapiens emerin protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >L44140-2|AAA92645.1| 254|Homo sapiens emerin protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >D64111-1|BAA10972.1| 254|Homo sapiens emerin protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >CR536536-1|CAG38773.1| 254|Homo sapiens EMD protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >BX936346-5|CAI43228.1| 254|Homo sapiens emerin (Emery-Dreifuss muscular dystrophy) protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >BX936346-4|CAI43229.1| 219|Homo sapiens emerin (Emery-Dreifuss muscular dystrophy) protein. Length = 219 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 105 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 163 >BT007401-1|AAP36065.1| 254|Homo sapiens emerin (Emery-Dreifuss muscular dystrophy) protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 >BC000738-1|AAH00738.1| 254|Homo sapiens emerin (Emery-Dreifuss muscular dystrophy) protein. Length = 254 Score = 28.7 bits (61), Expect = 7.2 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -3 Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129 +S + C RE+P+ G + + I S SS+ L++ SST F S SS Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 52,827,084 Number of Sequences: 237096 Number of extensions: 1011774 Number of successful extensions: 2109 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2109 length of database: 76,859,062 effective HSP length: 82 effective length of database: 57,417,190 effective search space used: 2756025120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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