Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1016
(394 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC108901-1|AAI08902.1| 329|Homo sapiens ITGB1BP2 protein protein. 59 4e-09
AF140690-1|AAF01676.1| 347|Homo sapiens melusin protein. 59 4e-09
AF110225-1|AAL36913.1| 347|Homo sapiens MSTP015 protein. 59 4e-09
BC072461-1|AAH72461.1| 332|Homo sapiens cysteine and histidine-... 52 9e-07
BC017789-1|AAH17789.1| 116|Homo sapiens CHORDC1 protein protein. 52 9e-07
AF192466-1|AAF18437.1| 332|Homo sapiens CHORD containing protei... 51 1e-06
AF123249-1|AAG43237.1| 313|Homo sapiens protein ( Homo sapiens ... 51 1e-06
BT009798-1|AAP88800.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007
BC000911-1|AAH00911.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007
AY321358-1|AAQ76039.1| 365|Homo sapiens SUGT1B protein. 39 0.007
AY271314-1|AAQ01749.1| 365|Homo sapiens SGT1B protein protein. 39 0.007
AL139089-2|CAI17072.1| 333|Homo sapiens SGT1, suppressor of G2 ... 39 0.007
AL139089-1|CAM23909.1| 365|Homo sapiens SGT1, suppressor of G2 ... 39 0.007
AJ344097-1|CAC51433.1| 333|Homo sapiens putative 40-6-3 protein... 39 0.007
AF132856-1|AAD30062.1| 333|Homo sapiens suppressor of G2 allele... 39 0.007
X86810-1|CAA60500.1| 254|Homo sapiens emerin protein. 29 7.2
X82434-1|CAA57817.1| 254|Homo sapiens emerin protein. 29 7.2
L44140-2|AAA92645.1| 254|Homo sapiens emerin protein. 29 7.2
D64111-1|BAA10972.1| 254|Homo sapiens emerin protein. 29 7.2
CR536536-1|CAG38773.1| 254|Homo sapiens EMD protein. 29 7.2
BX936346-5|CAI43228.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2
BX936346-4|CAI43229.1| 219|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2
BT007401-1|AAP36065.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2
BC000738-1|AAH00738.1| 254|Homo sapiens emerin (Emery-Dreifuss ... 29 7.2
>BC108901-1|AAI08902.1| 329|Homo sapiens ITGB1BP2 protein protein.
Length = 329
Score = 59.3 bits (137), Expect = 4e-09
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180
G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK +
Sbjct: 242 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 301
Query: 181 QVNTMEDDSVD 213
+++ E D D
Sbjct: 302 EMDEEESDDSD 312
>AF140690-1|AAF01676.1| 347|Homo sapiens melusin protein.
Length = 347
Score = 59.3 bits (137), Expect = 4e-09
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180
G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK +
Sbjct: 260 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 319
Query: 181 QVNTMEDDSVD 213
+++ E D D
Sbjct: 320 EMDEEESDDSD 330
>AF110225-1|AAL36913.1| 347|Homo sapiens MSTP015 protein.
Length = 347
Score = 59.3 bits (137), Expect = 4e-09
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV 180
G+ F+ ++L GVIN+E+SS ++ ++VEI L K +PGSW++L+ P KK +
Sbjct: 260 GNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKADPGSWAQLEHPDALAKKARAGVVL 319
Query: 181 QVNTMEDDSVD 213
+++ E D D
Sbjct: 320 EMDEEESDDSD 330
>BC072461-1|AAH72461.1| 332|Homo sapiens cysteine and
histidine-rich domain (CHORD)-containing 1 protein.
Length = 332
Score = 51.6 bits (118), Expect = 9e-07
Identities = 20/59 (33%), Positives = 40/59 (67%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ +T
Sbjct: 272 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDAT 330
>BC017789-1|AAH17789.1| 116|Homo sapiens CHORDC1 protein protein.
Length = 116
Score = 51.6 bits (118), Expect = 9e-07
Identities = 20/59 (33%), Positives = 40/59 (67%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ +T
Sbjct: 56 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDAT 114
>AF192466-1|AAF18437.1| 332|Homo sapiens CHORD containing protein-1
protein.
Length = 332
Score = 51.2 bits (117), Expect = 1e-06
Identities = 20/59 (33%), Positives = 39/59 (66%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ T
Sbjct: 272 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDDT 330
>AF123249-1|AAG43237.1| 313|Homo sapiens protein ( Homo sapiens
chymotrypsin-like protein mRNA, complete cds. ).
Length = 313
Score = 51.2 bits (117), Expect = 1e-06
Identities = 20/59 (33%), Positives = 39/59 (66%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
G+ F+ +++L GVI+++RS +M TK+EI ++K EP W+ L+ P + ++ ++ T
Sbjct: 253 GEKEFDQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASLELPAAKKQEKQKDDT 311
>BT009798-1|AAP88800.1| 333|Homo sapiens SGT1, suppressor of G2
allele of SKP1 (S. cerevisiae) protein.
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226
>BC000911-1|AAH00911.1| 333|Homo sapiens SGT1, suppressor of G2
allele of SKP1 (S. cerevisiae) protein.
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226
>AY321358-1|AAQ76039.1| 365|Homo sapiens SUGT1B protein.
Length = 365
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258
>AY271314-1|AAQ01749.1| 365|Homo sapiens SGT1B protein protein.
Length = 365
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258
>AL139089-2|CAI17072.1| 333|Homo sapiens SGT1, suppressor of G2
allele of SKP1 (S. cerevisiae) protein.
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226
>AL139089-1|CAM23909.1| 365|Homo sapiens SGT1, suppressor of G2
allele of SKP1 (S. cerevisiae) protein.
Length = 365
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 218 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 258
>AJ344097-1|CAC51433.1| 333|Homo sapiens putative 40-6-3 protein
protein.
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226
>AF132856-1|AAD30062.1| 333|Homo sapiens suppressor of G2 allele of
skp1 homolog protein.
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
+ L LEL I E+S+ +L TK+EIKLKK E W KL+
Sbjct: 186 YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 226
>X86810-1|CAA60500.1| 254|Homo sapiens emerin protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>X82434-1|CAA57817.1| 254|Homo sapiens emerin protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>L44140-2|AAA92645.1| 254|Homo sapiens emerin protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>D64111-1|BAA10972.1| 254|Homo sapiens emerin protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>CR536536-1|CAG38773.1| 254|Homo sapiens EMD protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>BX936346-5|CAI43228.1| 254|Homo sapiens emerin (Emery-Dreifuss
muscular dystrophy) protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>BX936346-4|CAI43229.1| 219|Homo sapiens emerin (Emery-Dreifuss
muscular dystrophy) protein.
Length = 219
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 105 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 163
>BT007401-1|AAP36065.1| 254|Homo sapiens emerin (Emery-Dreifuss
muscular dystrophy) protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
>BC000738-1|AAH00738.1| 254|Homo sapiens emerin (Emery-Dreifuss
muscular dystrophy) protein.
Length = 254
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 305 ISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSS 129
+S + C RE+P+ G + + I S SS+ L++ SST F S SS
Sbjct: 140 LSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLSYYPTSSSTSFMSSSSSSS 198
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,827,084
Number of Sequences: 237096
Number of extensions: 1011774
Number of successful extensions: 2109
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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