Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1016
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical pr... 34 0.032
AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 32 0.13
AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 32 0.13
Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 28 2.7
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 27 3.6
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 27 3.6
U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 27 4.8
U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 27 4.8
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 6.3
AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 27 6.3
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 26 8.4
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 26 8.4
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 26 8.4
AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical ... 26 8.4
AF039038-4|AAK21430.1| 332|Caenorhabditis elegans Hypothetical ... 26 8.4
AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical... 26 8.4
>U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical
protein F48E3.9 protein.
Length = 272
Score = 34.3 bits (75), Expect = 0.032
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 16 ELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV--QVN 189
+L LEL+ + E+SS+ + K+EI ++ E S LD ++E + + E+S V ++N
Sbjct: 175 DLVLELKAALQQEKSSSHGMLNKIEIMRQRCEDLEKSILDRDKSEDENIMERSRVEKELN 234
Query: 190 TMEDDSVDLSSVETI 234
+ S LSS I
Sbjct: 235 ALHALSKSLSSENKI 249
>AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing
protein protein.
Length = 321
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168
G+A+ +LD +L + E S + KVEI LK+ W +L F P + K EE
Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320
>AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein
protein 1 protein.
Length = 321
Score = 32.3 bits (70), Expect = 0.13
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168
G+A+ +LD +L + E S + KVEI LK+ W +L F P + K EE
Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320
>Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical
protein Y57G11C.6 protein.
Length = 482
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 KLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDD-SVDLSSVETITLNKVNMPSI 264
K KKG+P SK P P E S + T+EDD + +++ T+ MP++
Sbjct: 65 KAKKGKPKRDSKAATPALSPGSREMLSDHKKQTVEDDPPLPIATSVAGTVTTTGMPAL 122
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 76 GTKVEIKLKKGEPGSWSKLDFPRTE------PKKVEEKSTVQVNTMEDDSVDLSSVE 228
G +K+ K +PG S L P+TE PK+V + + D++ + VE
Sbjct: 315 GASNTVKIPKSQPGGRSPLPLPKTEITPDVKPKEVAPAKVQETPALLPDTLKVPKVE 371
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEK 171
++ S+A K + K+K E SK + EPKK EEK
Sbjct: 31 VKSSTAPAPAPKADSKMKAPEEKEKSKKSEKKEEPKKEEEK 71
>U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical
protein R151.7a protein.
Length = 672
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLD 135
I +S GTK+EI+LK G+ ++++ D
Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224
>U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical
protein R151.7b protein.
Length = 479
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLD 135
I +S GTK+EI+LK G+ ++++ D
Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 26.6 bits (56), Expect = 6.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 52 ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228
ER + + T + GS + + R + K+V K N+ +D +L S+
Sbjct: 72 ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130
Query: 229 TITLNKVNMPSI 264
T+ L KVN P+I
Sbjct: 131 TLGLQKVNAPTI 142
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 26.6 bits (56), Expect = 6.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 52 ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228
ER + + T + GS + + R + K+V K N+ +D +L S+
Sbjct: 72 ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130
Query: 229 TITLNKVNMPSI 264
T+ L KVN P+I
Sbjct: 131 TLGLQKVNAPTI 142
>AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical
protein H42K12.3 protein.
Length = 522
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 76 GTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTME 198
G+K LKK E SK++FP E +++ E S +E
Sbjct: 335 GSKTYEILKKQETVKKSKIEFPEIEEQEITEDSADSSRAIE 375
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
+ R +S+ GTK E ++GE + D EP + KST
Sbjct: 24 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
+ R +S+ GTK E ++GE + D EP + KST
Sbjct: 2 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 44
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
+ R +S+ GTK E ++GE + D EP + KST
Sbjct: 24 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66
>AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical
protein T10D4.3 protein.
Length = 410
Score = 26.2 bits (55), Expect = 8.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 184 PGQLTFLLPFLVQSWEN 134
PG+L ++PF V+ W+N
Sbjct: 269 PGKLNMVIPFFVRLWKN 285
>AF039038-4|AAK21430.1| 332|Caenorhabditis elegans Hypothetical
protein K06A5.2 protein.
Length = 332
Score = 26.2 bits (55), Expect = 8.4
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -3
Query: 245 LFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVPNIE 66
+ N +V R S I+ T+ + S+ +V SSL G FIS L+P +
Sbjct: 99 IVNTLVDLSPRQISSKPIIETFVL---SSVILTVFSLSSL--LGGYILAPFISFLIPPVG 153
Query: 65 AELLSILITPLS 30
A + S L+ PL+
Sbjct: 154 AAIFSGLVAPLA 165
>AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical
protein D1007.16 protein.
Length = 251
Score = 26.2 bits (55), Expect = 8.4
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 43 INIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSS 222
IN++++ GT E+ LK+G + + R+ P EEK+ +Q M+ D+ D SS
Sbjct: 108 INVKKTRDLDQGT--ELALKRGIERLRTSSNNQRSGPSSPEEKAKIQ-KQMQRDTSDSSS 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,252,794
Number of Sequences: 27780
Number of extensions: 157833
Number of successful extensions: 491
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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