BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1016 (394 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical pr... 34 0.032 AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD contain... 32 0.13 AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein... 32 0.13 Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical pr... 28 2.7 AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 27 3.6 AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 27 3.6 U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical p... 27 4.8 U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical p... 27 4.8 Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 27 6.3 Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 6.3 AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical ... 27 6.3 U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 26 8.4 DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 26 8.4 AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 26 8.4 AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical ... 26 8.4 AF039038-4|AAK21430.1| 332|Caenorhabditis elegans Hypothetical ... 26 8.4 AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical... 26 8.4 >U28735-1|AAG38886.2| 272|Caenorhabditis elegans Hypothetical protein F48E3.9 protein. Length = 272 Score = 34.3 bits (75), Expect = 0.032 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +1 Query: 16 ELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV--QVN 189 +L LEL+ + E+SS+ + K+EI ++ E S LD ++E + + E+S V ++N Sbjct: 175 DLVLELKAALQQEKSSSHGMLNKIEIMRQRCEDLEKSILDRDKSEDENIMERSRVEKELN 234 Query: 190 TMEDDSVDLSSVETI 234 + S LSS I Sbjct: 235 ALHALSKSLSSENKI 249 >AF192264-1|AAF18435.1| 321|Caenorhabditis elegans CHORD containing protein protein. Length = 321 Score = 32.3 bits (70), Expect = 0.13 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168 G+A+ +LD +L + E S + KVEI LK+ W +L F P + K EE Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320 >AC006708-3|AAF60417.1| 321|Caenorhabditis elegans Chord protein protein 1 protein. Length = 321 Score = 32.3 bits (70), Expect = 0.13 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168 G+A+ +LD +L + E S + KVEI LK+ W +L F P + K EE Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320 >Z99281-3|CAB16508.1| 482|Caenorhabditis elegans Hypothetical protein Y57G11C.6 protein. Length = 482 Score = 27.9 bits (59), Expect = 2.7 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 94 KLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDD-SVDLSSVETITLNKVNMPSI 264 K KKG+P SK P P E S + T+EDD + +++ T+ MP++ Sbjct: 65 KAKKGKPKRDSKAATPALSPGSREMLSDHKKQTVEDDPPLPIATSVAGTVTTTGMPAL 122 >AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical protein Y105C5A.24 protein. Length = 478 Score = 27.5 bits (58), Expect = 3.6 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Frame = +1 Query: 76 GTKVEIKLKKGEPGSWSKLDFPRTE------PKKVEEKSTVQVNTMEDDSVDLSSVE 228 G +K+ K +PG S L P+TE PK+V + + D++ + VE Sbjct: 315 GASNTVKIPKSQPGGRSPLPLPKTEITPDVKPKEVAPAKVQETPALLPDTLKVPKVE 371 >AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical protein F36H12.3 protein. Length = 335 Score = 27.5 bits (58), Expect = 3.6 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEK 171 ++ S+A K + K+K E SK + EPKK EEK Sbjct: 31 VKSSTAPAPAPKADSKMKAPEEKEKSKKSEKKEEPKKEEEK 71 >U00036-14|ABC71802.1| 672|Caenorhabditis elegans Hypothetical protein R151.7a protein. Length = 672 Score = 27.1 bits (57), Expect = 4.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLD 135 I +S GTK+EI+LK G+ ++++ D Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224 >U00036-13|ABC71803.1| 479|Caenorhabditis elegans Hypothetical protein R151.7b protein. Length = 479 Score = 27.1 bits (57), Expect = 4.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLD 135 I +S GTK+EI+LK G+ ++++ D Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224 >Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein C05C10.2b protein. Length = 1553 Score = 26.6 bits (56), Expect = 6.3 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 52 ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228 ER + + T + GS + + R + K+V K N+ +D +L S+ Sbjct: 72 ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130 Query: 229 TITLNKVNMPSI 264 T+ L KVN P+I Sbjct: 131 TLGLQKVNAPTI 142 >Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein C05C10.2a protein. Length = 1551 Score = 26.6 bits (56), Expect = 6.3 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 52 ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228 ER + + T + GS + + R + K+V K N+ +D +L S+ Sbjct: 72 ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130 Query: 229 TITLNKVNMPSI 264 T+ L KVN P+I Sbjct: 131 TLGLQKVNAPTI 142 >AF026207-1|AAB71266.1| 522|Caenorhabditis elegans Hypothetical protein H42K12.3 protein. Length = 522 Score = 26.6 bits (56), Expect = 6.3 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +1 Query: 76 GTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTME 198 G+K LKK E SK++FP E +++ E S +E Sbjct: 335 GSKTYEILKKQETVKKSKIEFPEIEEQEITEDSADSSRAIE 375 >U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel type/putative nematodecalcium channel protein 2 protein. Length = 1785 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 + R +S+ GTK E ++GE + D EP + KST Sbjct: 24 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66 >DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1763 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 + R +S+ GTK E ++GE + D EP + KST Sbjct: 2 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 44 >AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type voltage-gatedion channel alpha-1 subunit protein. Length = 1785 Score = 26.2 bits (55), Expect = 8.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +1 Query: 49 IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177 + R +S+ GTK E ++GE + D EP + KST Sbjct: 24 LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66 >AF098997-6|AAC68716.1| 410|Caenorhabditis elegans Hypothetical protein T10D4.3 protein. Length = 410 Score = 26.2 bits (55), Expect = 8.4 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -1 Query: 184 PGQLTFLLPFLVQSWEN 134 PG+L ++PF V+ W+N Sbjct: 269 PGKLNMVIPFFVRLWKN 285 >AF039038-4|AAK21430.1| 332|Caenorhabditis elegans Hypothetical protein K06A5.2 protein. Length = 332 Score = 26.2 bits (55), Expect = 8.4 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -3 Query: 245 LFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVPNIE 66 + N +V R S I+ T+ + S+ +V SSL G FIS L+P + Sbjct: 99 IVNTLVDLSPRQISSKPIIETFVL---SSVILTVFSLSSL--LGGYILAPFISFLIPPVG 153 Query: 65 AELLSILITPLS 30 A + S L+ PL+ Sbjct: 154 AAIFSGLVAPLA 165 >AF003151-20|AAK18920.2| 251|Caenorhabditis elegans Hypothetical protein D1007.16 protein. Length = 251 Score = 26.2 bits (55), Expect = 8.4 Identities = 19/60 (31%), Positives = 32/60 (53%) Frame = +1 Query: 43 INIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSS 222 IN++++ GT E+ LK+G + + R+ P EEK+ +Q M+ D+ D SS Sbjct: 108 INVKKTRDLDQGT--ELALKRGIERLRTSSNNQRSGPSSPEEKAKIQ-KQMQRDTSDSSS 164 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,252,794 Number of Sequences: 27780 Number of extensions: 157833 Number of successful extensions: 491 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 491 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 598330768 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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