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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1016
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical pr...    34   0.032
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    32   0.13 
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    32   0.13 
Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    27   3.6  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    27   3.6  
U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical p...    27   4.8  
U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical p...    27   4.8  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    27   6.3  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    26   8.4  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    26   8.4  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    26   8.4  
AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical ...    26   8.4  
AF039038-4|AAK21430.1|  332|Caenorhabditis elegans Hypothetical ...    26   8.4  
AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical...    26   8.4  

>U28735-1|AAG38886.2|  272|Caenorhabditis elegans Hypothetical
           protein F48E3.9 protein.
          Length = 272

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +1

Query: 16  ELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTV--QVN 189
           +L LEL+  +  E+SS+  +  K+EI  ++ E    S LD  ++E + + E+S V  ++N
Sbjct: 175 DLVLELKAALQQEKSSSHGMLNKIEIMRQRCEDLEKSILDRDKSEDENIMERSRVEKELN 234

Query: 190 TMEDDSVDLSSVETI 234
            +   S  LSS   I
Sbjct: 235 ALHALSKSLSSENKI 249


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1   GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168
           G+A+ +LD +L   +  E S   +   KVEI LK+     W +L F P  + K  EE
Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 1   GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF-PRTEPKKVEE 168
           G+A+ +LD +L   +  E S   +   KVEI LK+     W +L F P  + K  EE
Sbjct: 264 GNASVDLDYDLWDEVIPEESRVVIGERKVEISLKQKHGTGWPRLKFDPELDAKNDEE 320


>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  KLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDD-SVDLSSVETITLNKVNMPSI 264
           K KKG+P   SK   P   P   E  S  +  T+EDD  + +++    T+    MP++
Sbjct: 65  KAKKGKPKRDSKAATPALSPGSREMLSDHKKQTVEDDPPLPIATSVAGTVTTTGMPAL 122


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +1

Query: 76  GTKVEIKLKKGEPGSWSKLDFPRTE------PKKVEEKSTVQVNTMEDDSVDLSSVE 228
           G    +K+ K +PG  S L  P+TE      PK+V      +   +  D++ +  VE
Sbjct: 315 GASNTVKIPKSQPGGRSPLPLPKTEITPDVKPKEVAPAKVQETPALLPDTLKVPKVE 371


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEK 171
           ++ S+A     K + K+K  E    SK    + EPKK EEK
Sbjct: 31  VKSSTAPAPAPKADSKMKAPEEKEKSKKSEKKEEPKKEEEK 71


>U00036-14|ABC71802.1|  672|Caenorhabditis elegans Hypothetical
           protein R151.7a protein.
          Length = 672

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLD 135
           I  +S    GTK+EI+LK G+  ++++ D
Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224


>U00036-13|ABC71803.1|  479|Caenorhabditis elegans Hypothetical
           protein R151.7b protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLD 135
           I  +S    GTK+EI+LK G+  ++++ D
Sbjct: 196 IAETSGLQTGTKIEIRLKVGDSATYAEED 224


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 52  ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228
           ER +  +  T  +        GS +   + R + K+V  K     N+  +D  +L  S+ 
Sbjct: 72  ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130

Query: 229 TITLNKVNMPSI 264
           T+ L KVN P+I
Sbjct: 131 TLGLQKVNAPTI 142


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 52  ERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLS-SVE 228
           ER +  +  T  +        GS +   + R + K+V  K     N+  +D  +L  S+ 
Sbjct: 72  ERETGIIGSTLRQDSTDSDSTGSSNMNPYDRLD-KEVISKKNAHTNSYRNDVDELEGSLR 130

Query: 229 TITLNKVNMPSI 264
           T+ L KVN P+I
Sbjct: 131 TLGLQKVNAPTI 142


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 76  GTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTME 198
           G+K    LKK E    SK++FP  E +++ E S      +E
Sbjct: 335 GSKTYEILKKQETVKKSKIEFPEIEEQEITEDSADSSRAIE 375


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
           + R  +S+ GTK E   ++GE    +  D    EP  +  KST
Sbjct: 24  LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
           + R  +S+ GTK E   ++GE    +  D    EP  +  KST
Sbjct: 2   LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 44


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  IERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKST 177
           + R  +S+ GTK E   ++GE    +  D    EP  +  KST
Sbjct: 24  LTRRKSSIDGTKTERNRRRGESIGGAFTDMINIEPTSIINKST 66


>AF098997-6|AAC68716.1|  410|Caenorhabditis elegans Hypothetical
           protein T10D4.3 protein.
          Length = 410

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 184 PGQLTFLLPFLVQSWEN 134
           PG+L  ++PF V+ W+N
Sbjct: 269 PGKLNMVIPFFVRLWKN 285


>AF039038-4|AAK21430.1|  332|Caenorhabditis elegans Hypothetical
           protein K06A5.2 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = -3

Query: 245 LFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHEPGSPFFNFISTLVPNIE 66
           + N +V    R   S  I+ T+ +   S+   +V   SSL    G     FIS L+P + 
Sbjct: 99  IVNTLVDLSPRQISSKPIIETFVL---SSVILTVFSLSSL--LGGYILAPFISFLIPPVG 153

Query: 65  AELLSILITPLS 30
           A + S L+ PL+
Sbjct: 154 AAIFSGLVAPLA 165


>AF003151-20|AAK18920.2|  251|Caenorhabditis elegans Hypothetical
           protein D1007.16 protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 43  INIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSS 222
           IN++++     GT  E+ LK+G     +  +  R+ P   EEK+ +Q   M+ D+ D SS
Sbjct: 108 INVKKTRDLDQGT--ELALKRGIERLRTSSNNQRSGPSSPEEKAKIQ-KQMQRDTSDSSS 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,252,794
Number of Sequences: 27780
Number of extensions: 157833
Number of successful extensions: 491
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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