Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1016
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.1  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          20   8.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 LSRSIRWKTIQSTSVQWKR 232
           +S S++W +  +  V W+R
Sbjct: 490 MSSSLQWSSTHTLDVAWRR 508


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 LSRSIRWKTIQSTSVQWKR 232
           +S S++W +  +  V W+R
Sbjct: 528 MSSSLQWSSTHTLDVAWRR 546


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  TKVEIKLKKGEPGSWSKLDF 138
           TK  ++ K+G+ G W + +F
Sbjct: 939 TKYILQYKEGDAGIWQQQEF 958


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 79  TKVEIKLKKGEPGSWSKLDF 138
           TK  ++ K+G+ G W + +F
Sbjct: 935 TKYILQYKEGDAGIWQQQEF 954


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  LVPNIEAELLSILITPLSSRS 21
           +VP IE  L + L  PLSS +
Sbjct: 261 VVPEIEDNLETSLFRPLSSEA 281


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 78 TQHRSRTSFDIDNP 37
          T+     SFDID+P
Sbjct: 10 TEFEENVSFDIDDP 23


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 151 PKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNMP 258
           P +    +T   N   DD+     V+ ITL  +++P
Sbjct: 38  PDRYRSVATQVFNRFGDDTESKLPVKAITLPDLSIP 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,691
Number of Sequences: 438
Number of extensions: 1862
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)