Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1016
(394 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11260.1 68417.m01822 phosphatase-related low similarity to p... 36 0.010
At4g02450.1 68417.m00332 glycine-rich protein similar to several... 32 0.16
At1g09040.1 68414.m01008 expressed protein 31 0.37
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 29 1.1
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 29 1.1
At1g18670.1 68414.m02330 protein kinase family protein contains ... 28 2.0
At3g08600.1 68416.m00999 expressed protein 28 2.6
At2g17270.1 68415.m01995 mitochondrial substrate carrier family ... 28 2.6
At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase fami... 27 3.4
At3g05760.1 68416.m00647 expressed protein 27 3.4
At5g20310.1 68418.m02417 hypothetical protein 27 6.0
At5g11430.1 68418.m01335 transcription elongation factor-related... 27 6.0
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 27 6.0
At1g76900.2 68414.m08950 F-box family protein / tubby family pro... 27 6.0
At1g76900.1 68414.m08949 F-box family protein / tubby family pro... 27 6.0
At3g26750.1 68416.m03346 expressed protein 26 7.9
At2g21480.1 68415.m02556 protein kinase family protein contains ... 26 7.9
>At4g11260.1 68417.m01822 phosphatase-related low similarity to
protein phosphatase T [Saccharomyces cerevisiae]
GI:897806; contains Pfam profiles PF00515: TPR Domain,
PF05002: SGS domain, PF04969: CS domain
Length = 358
Score = 35.9 bits (79), Expect = 0.010
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLDF 138
G+ A+ L L G I E+ +L TKVEI+L K E +W+ L++
Sbjct: 202 GEEAYHLQPRLFGKIIPEKCRFEVLSTKVEIRLAKAEIITWASLEY 247
>At4g02450.1 68417.m00332 glycine-rich protein similar to several
proteins containing a tandem repeat region such as
Plasmodium falciparum GGM tandem repeat protein
(GB:U27807)
Length = 241
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 13 FELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKL 132
+EL LEL +N+E S ++ + ++K EP W+KL
Sbjct: 51 YELKLELADKVNVEESKINIGERSIFCIIEKAEPERWNKL 90
>At1g09040.1 68414.m01008 expressed protein
Length = 911
Score = 30.7 bits (66), Expect = 0.37
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 25 LELRGVINIE-RSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQVNTMED 201
LEL + + RSS++ LGT E+ + + G + D PR + + +T + ME
Sbjct: 742 LELPSISGLNNRSSSNDLGTTQELGSSEQQHGQQNNTDGPRRQSTRKRPLTTRALEAMES 801
Query: 202 DSVDLSSVETIT 237
D + +++ T
Sbjct: 802 DFLTTKRMKSTT 813
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
G+ A+ L L G I ++ +L TK+EI L K + +W+ L+
Sbjct: 194 GEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIITWASLE 238
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 1 GDAAFELDLELRGVINIERSSASMLGTKVEIKLKKGEPGSWSKLD 135
G+ A+ L L G I ++ +L TK+EI L K + +W+ L+
Sbjct: 194 GEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIITWASLE 238
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 KLKKGEPGSWSKLDFPR-TEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNMPSI 264
KL+K G++S + R TE ++ V+ + E +SV + E + L K+N P+I
Sbjct: 133 KLEKIGQGTYSSVFRARETETGRIVALKKVRFDNFEPESVRFMAREILILRKLNHPNI 190
>At3g08600.1 68416.m00999 expressed protein
Length = 316
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 110 NLAHGPSLIFPGLNQKR*KKSQLSRSIRWKTIQS 211
++A PSL PG+ K+ KKS S S W + S
Sbjct: 215 SVASAPSLAPPGIESKKKKKSSDSNSKTWIIVGS 248
>At2g17270.1 68415.m01995 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 309
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 137 KSSLDHEPGSPFFNFISTLVPNIEAELLSILITPL 33
KS LD E SP+F + T+ + A + ITPL
Sbjct: 5 KSKLDEELSSPWFYTVCTMGGMLSAGTTHLAITPL 39
>At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase family
protein similar to SP|P25539 Riboflavin biosynthesis
protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(EC 3.5.4.26) (Riboflavin-specific deaminase);
5-amino-6-(5- phosphoribosylamino)uracil reductase (EC
1.1.1.193) (HTP reductase)] {Escherichia coli}; contains
Pfam profile PF00383: Cytidine and deoxycytidylate
deaminase zinc-binding region
Length = 426
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 190 TMEDDSVDLSSVETITLNKVNMPSI-GFSLEMQFCDILL 303
++ + + S VET+ L K+N+ SI + C +LL
Sbjct: 318 SVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLL 356
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 43 INIERSSASMLGTKVEIKLKKGEPGSWSKLDFPRTEPKKVEEKSTVQ 183
+ +ERSS + + E+ K+ PG++++ D K+ EE+ ++
Sbjct: 115 MRVERSSLEQVQERFEVLKKRKAPGTFTEQDLDERIRKQQEEEEELK 161
>At5g20310.1 68418.m02417 hypothetical protein
Length = 394
Score = 26.6 bits (56), Expect = 6.0
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -3
Query: 323 NISKAFISKMSQNCISREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVDFSSTFFGSV 144
+++KA I +SQNCIS ILG ++ ++ + S V+ W DF + V
Sbjct: 100 DVAKALIEYISQNCISTF--ILG--ASLKKSITRLFKADDIPSNVMRWAPDFCTVL---V 152
Query: 143 LGKSSL 126
L K L
Sbjct: 153 LSKGRL 158
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 KLKKGEPGSWSKLDFPRTEPKKVEEKS-TVQVNTMEDDSVDLSSVE 228
K KG P S P +P+K++E + N DD D+S VE
Sbjct: 485 KSPKGSPKELSDKSLPEAKPEKIDEVTPEFDANVKVDD--DISRVE 528
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 124 SKLDFPRTEPKKVEEKSTVQVNTMEDDSVDLSSVETITLNKVNMPSIGFSLEMQFCDILL 303
+K D P P+KV+ + T + +ED ++ +VE + + +L +Q D+ L
Sbjct: 328 NKCDKPGANPEKVKYQLTSEGIELEDIGGNVQAVEVSAAKSTGLDKLEEALLLQAVDMDL 387
Query: 304 MNALD 318
+D
Sbjct: 388 KARVD 392
>At1g76900.2 68414.m08950 F-box family protein / tubby family
protein similar to Tubby protein (SP:P50586) {Mus
musculus}; similar to Chain A, C-Terminal Domain Of
Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
similar to Tubby related protein 1 (Tubby-like protein
1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile: PF01167: Tub family; contains Pfam
PF00646: F-box domain
Length = 455
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 218 LRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHE 117
+ S+ S I ++ DFSS F +LG S D E
Sbjct: 300 ITSSSSRKITYDYSNDFSSARFSDILGPLSEDQE 333
>At1g76900.1 68414.m08949 F-box family protein / tubby family
protein similar to Tubby protein (SP:P50586) {Mus
musculus}; similar to Chain A, C-Terminal Domain Of
Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
similar to Tubby related protein 1 (Tubby-like protein
1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile: PF01167: Tub family; contains Pfam
PF00646: F-box domain
Length = 455
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 218 LRSTESSSIVLTWTVDFSSTFFGSVLGKSSLDHE 117
+ S+ S I ++ DFSS F +LG S D E
Sbjct: 300 ITSSSSRKITYDYSNDFSSARFSDILGPLSEDQE 333
>At3g26750.1 68416.m03346 expressed protein
Length = 526
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 278 SREKPILGMLTLFNVIVSTELRSTESSSIVLTWTVD 171
S KPI G + LF +ST + ESS + +T++
Sbjct: 371 SNGKPIDGGVRLFKCYISTSSTTGESSDVFRKYTLE 406
>At2g21480.1 68415.m02556 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 871
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 202 DSVDLSSVETITLNKVNMPSIGFSLEMQFCDILLMNALDILTYYYLS 342
DS + +T N + PS + + + FCDI+ + D+ Y++
Sbjct: 307 DSQTIDPNFNVTWNFPSNPSFHYFIRLHFCDIISKSLNDLYFNVYIN 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,738,299
Number of Sequences: 28952
Number of extensions: 151121
Number of successful extensions: 472
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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