Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1015X
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   4.4  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           23   5.9  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    23   7.8  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    23   7.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   7.8  

>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 144 QRINLFSLNLPSSIE*YQNLPPAEHSYNELPI 239
           Q+IN+  LN+ +S      L   E SYN L I
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYNFLTI 133


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 171 LPSSIE*YQNLPPAEHSYNELPILRY 248
           LPS +  Y +L P       LP+LRY
Sbjct: 188 LPSHVLSYHSLIPRRMIVTVLPVLRY 213


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 153 NLFSLNLPSSIE*YQNLPPAEHSYNELPILR 245
           +L  LNL S ++ +++LP    SY    +LR
Sbjct: 186 DLEDLNLQSIVQTFEDLPEGIQSYAFFQLLR 216


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 88  IYEPIEEIIFHEIYERD 38
           +Y+PI E + HE+ +R+
Sbjct: 533 LYDPIHEYVNHELRKRE 549


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 237 LVVHYMNVLLVVNFDIIQLMMGDLKK 160
           LV   M +++V  +DII   + DLK+
Sbjct: 512 LVEFPMRIVVVTMYDIIVYFLSDLKR 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,277
Number of Sequences: 5004
Number of extensions: 8256
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)