Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1015X
         (273 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   29   0.44 
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.44 
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.44 
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)                     28   1.3  
SB_41084| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 SIE*YQNLPPAEHSYNELPIL 242
           S+E  Q  PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
          Length = 319

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 169 ISHHQLNDIKIYHQQNIHIMNYQF 240
           I+HHQ + I I H Q+  I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319


>SB_41084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 165 LNLPSSIE*YQNLPPAEHSYNELPIL 242
           + LPS +E  Q  PPA H+Y +LP +
Sbjct: 18  VKLPS-LEWVQQSPPALHTYMKLPFV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,406,601
Number of Sequences: 59808
Number of extensions: 48273
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)