Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1015X
         (273 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   6.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   6.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          19   8.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      19   8.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 172 SHHQLNDIKIYHQQNIHIM 228
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 4.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 231 VHYMNVLLVVNFD 193
           +H+ NV+  +NFD
Sbjct: 1   MHFNNVIKYINFD 13


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 153 NLFSLNLPSSIE*YQNLPPAEHSYNELPI 239
           N  SL L    E  +NL   E  ++ LPI
Sbjct: 70  NHISLTLDLEYELVENLQANEKPWSTLPI 98


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 6.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 153 NLFSLNLPSSIE*YQNLPPAEHSYNELPI 239
           N  SL L    E  +NL   E  ++ LPI
Sbjct: 108 NHISLTLDLEYELVENLQANEKPWSTLPI 136


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 169 ISHHQLNDIKIYHQQNIHIMNY 234
           I +    D+ IY++ N   MNY
Sbjct: 665 IPNMYFKDVFIYNRPNEESMNY 686


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.4 bits (38), Expect = 8.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 169 ISHHQLNDIKIYHQQNIHIMNY 234
           I +    D+ IY++ N   MNY
Sbjct: 665 IPNMYFKDVFIYNRPNEESMNY 686


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,301
Number of Sequences: 438
Number of extensions: 790
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5263398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)