Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1014
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    29   2.9  
Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    29   3.9  
AF125448-6|AAD12811.1|  160|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    28   5.1  

>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = -1

Query: 189 RDFKT*IISMFIINYVNFLLKADIHKSGDICTVNLLLDMRK 67
           ++F    +  F++NY+ F+L +++ KS  +C   L +++ +
Sbjct: 552 KEFLNDSVMAFMLNYIAFMLSSELMKSVHMCNTFLFVNLTR 592


>Z92808-1|CAB07266.2|  606|Caenorhabditis elegans Hypothetical
           protein M04C3.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 282 KRNNETLYKKTGFCNNLVEIIVALTIFFIIRLLN--TT*FTLMLQMXNNFCA 431
           K+ NE   +K  FCNNL+  I++ T  F I+  N  T     + +M ++FCA
Sbjct: 479 KKENEPNIRK--FCNNLLAAIISYTEEFYIKHFNISTESDEDIEEMYDSFCA 528


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 333 LNYYKILFSYITFHYFFFKLSIFQFNGTNRLANVLEIYSIIV 208
           LN+  I   Y   + F++ ++ FQF+G   LAN  +  S+ +
Sbjct: 192 LNFKHIYVYYALGYVFYYLVNYFQFSGNVLLANTPKAISLAI 233


>AF125448-6|AAD12811.1|  160|Caenorhabditis elegans Hypothetical
           protein H14E04.4 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 11  PQNSTYFSNFTLKKNVMASFLISNRRLTVHISPLLWISAFSKKF 142
           P+   +F NF+ K   +++    N++ T   + ++    FSKKF
Sbjct: 75  PKELCFFLNFSCKNTFLSTLCSKNKQKTSKTAKVMNFQNFSKKF 118


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 312 TGFCNNLVEIIVALTIFFIIRLLNTT*FTLMLQMXNN 422
           TG+CNN  +   A ++  I RLL TT +T  LQ   N
Sbjct: 210 TGYCNNRGKPTQANSVTAIRRLLGTTSYTDGLQAIRN 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,353
Number of Sequences: 27780
Number of extensions: 179408
Number of successful extensions: 271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)