Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1014
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18870.1 68417.m02783 heat shock transcription factor family ...    30   1.6  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    27   8.4  
At3g15990.1 68416.m02023 sulfate transporter, putative similar t...    27   8.4  

>At4g18870.1 68417.m02783 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 291

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 345 Q*FQLNYYKILFSYITFHYFFFKLSIFQFNGTN 247
           Q F  ++ + LF+ +  H+FF+KL IF F   N
Sbjct: 179 QEFCKDHLRRLFNTLHIHFFFYKLKIFGFKKIN 211


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 330 NYYKILFSYITFHYFFFKLSIFQFNGTNRLANVLEIYSIIVDTALVVRDF 181
           N   +LFS + FH+ F    +   N T+ +  +   YSI+ D   V+R++
Sbjct: 4   NRSNLLFSLVLFHFLFVPTQLQALN-TDGVLLLTFKYSILTDPLSVLRNW 52


>At3g15990.1 68416.m02023 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain
          Length = 653

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +2

Query: 65  SFLISNRRLTVHISPLLWISAFSKKFT*LIINILMIQVLKSLT 193
           S L++ R +++    L WISA S   + +II+ L++ +++S T
Sbjct: 263 SILLTTRHISMRKPKLFWISAASPLAS-VIISTLLVYLIRSKT 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,341
Number of Sequences: 28952
Number of extensions: 149685
Number of successful extensions: 239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)