Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1013
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 31 0.66
U12965-2|AAN63409.1| 67|Caenorhabditis elegans Hypothetical pr... 29 4.7
U12965-1|AAA20611.1| 176|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z70205-6|CAH60749.1| 260|Caenorhabditis elegans Hypothetical pr... 28 6.2
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.2
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 8.1
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 28 8.1
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 28 8.1
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 28 8.1
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 8.1
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 8.1
AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical ... 28 8.1
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 8.1
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 461 RPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 348
RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>U12965-2|AAN63409.1| 67|Caenorhabditis elegans Hypothetical
protein F23F12.9b protein.
Length = 67
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 521 NNTIQIAIFSDIIMISSR*TRPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSRL 345
+NT+Q A + + + P+Y T + + + FTR SG S S+S S++
Sbjct: 2 SNTMQGAHYPQMAFDPTWQMHPAYATATAFNPYNVSFDFTRSPNTSGGSDESMSDGSKI 60
>U12965-1|AAA20611.1| 176|Caenorhabditis elegans Hypothetical
protein F23F12.9a protein.
Length = 176
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 521 NNTIQIAIFSDIIMISSR*TRPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSRL 345
+NT+Q A + + + P+Y T + + + FTR SG S S+S S++
Sbjct: 2 SNTMQGAHYPQMAFDPTWQMHPAYATATAFNPYNVSFDFTRSPNTSGGSDESMSDGSKI 60
>Z70205-6|CAH60749.1| 260|Caenorhabditis elegans Hypothetical
protein C11H1.9b protein.
Length = 260
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -1
Query: 349 GCL--VRAVAFVGQASVNQL-LYFQFVFSIRHFSQATSFLNFPSLVISCDLISIHRAYFF 179
GCL +R + + +N + F ++ ++SQ F N+P LV D+++I A +
Sbjct: 157 GCLSSLRHIVNMDGYEINPFTMVFVTSGTLAYYSQLFHFENYPELVTPVDMVNI--AKWI 214
Query: 178 NGSFSVLKSPVFSLF 134
+ + + K+ + ++F
Sbjct: 215 HVPYKIAKTLILTIF 229
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 45 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 224
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 225 KDGKFKKD 248
KD K K++
Sbjct: 7325 KDDKLKQE 7332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 45 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 224
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 225 KDGKFKKD 248
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 45 AQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 224
A A ++K++ KH AD + + D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 225 KDGKFKKD 248
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 310 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 432
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 310 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 432
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 96 DCLSETKADEQLVNKLKTGDFKTENEPLK 182
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -1
Query: 244 FLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVSERQSALCFFKFS 71
F + + C L+ + R Y F +L VF +FTN F S R S C+ + S
Sbjct: 6 FFQIDNFLKICSLVEMQRIYQFILIIILLLLLVFDIFTNKPELFPSSRISP-CYTESS 62
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 96 DCLSETKADEQLVNKLKTGDFKTENEPLK 182
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 18 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 170
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 310 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 432
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF100670-2|AAN73857.3| 554|Caenorhabditis elegans Hypothetical
protein M4.1 protein.
Length = 554
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 30 VCVVLAQALTDEQKENLKKHRADCLSETKA--DEQLVNKLKTGDFKTENE 173
V + LTD Q++NLK ++ ++ET + L N + +G F E E
Sbjct: 330 VVTTYEEKLTDLQQKNLKLSKSCVINETASGLSRLLANSINSGSFIDEPE 379
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 18 IVFVVCVVLAQALTDEQKENLKKHRADCL-SETKADEQLVNKLKTGD-FKTEN 170
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,436
Number of Sequences: 27780
Number of extensions: 353020
Number of successful extensions: 1130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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