Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1012X
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   0.81 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   1.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    24   9.9  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 304 WSYYTGCMNPTNIMNFGIRKKERKTFLNQNTMLY 203
           W+  TG M P NI++ GI K   +TF +Q+ M +
Sbjct: 829 WTRGTGLMAPNNIVSQGIEKYGVRTF-SQSEMAF 861


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 355 DYKAIIRQHDQIICSQHWSYYTGC 284
           DY+  I   D++  + HWS +T C
Sbjct: 263 DYQIAIYMFDEMYRTHHWSSFTAC 286


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 352 NRYDIYIYIYMFAFT 396
           N++ IYIYIY F ++
Sbjct: 75  NKFSIYIYIYFFFYS 89


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 310 QHWSYYTGCMNPTNIM 263
           Q WS Y+G  +P NI+
Sbjct: 11  QSWSSYSGAFHPINIL 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,306
Number of Sequences: 5004
Number of extensions: 40499
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)