Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1012X
         (466 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0330 - 16816497-16819952                                         28   4.3  
05_06_0039 + 25113409-25113522,25113827-25113915,25114013-251141...    27   5.6  
03_05_0800 - 27815322-27815838,27817549-27817805                       27   5.6  
08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137     27   9.8  
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386...    27   9.8  

>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 347  GHYTTTRPNHLFSTLELLHWMYEPNEYNEFWH*KER 240
            G  T+ +   L S+ ELL W +  +  N  W  KE+
Sbjct: 906  GKLTSMKNPKLISSRELLQWSFNHDRINTIWKGKEQ 941


>05_06_0039 +
           25113409-25113522,25113827-25113915,25114013-25114148,
           25114231-25114305,25114456-25114577,25114680-25114755,
           25115242-25115301,25115383-25115511
          Length = 266

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 416 VAQIFTYVNANIYIYMYISYRLQGHYTTTRPNHLFSTL 303
           VA   T++ A I ++MY+ Y++  HY   +    F  L
Sbjct: 197 VAMFLTWLVARIILFMYLFYQIFLHYDQIKQMETFGYL 234


>03_05_0800 - 27815322-27815838,27817549-27817805
          Length = 257

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 383 IYIYMYISYRLQGHYTTTRPNHLF 312
           I +Y+Y+ Y    HY +T P  LF
Sbjct: 99  ILLYLYVLYSPDWHYRSTMPTFLF 122


>08_02_1584 - 28039228-28039342,28039987-28040156,28043009-28043137
          Length = 137

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 183 TTQT*IFNQNRGHISLFLYDFSILKLKSVLFKMRS*MY 70
           TT+  I +  R H+S+ LY   + +++ +L K+R  +Y
Sbjct: 42  TTENSIRHYRRLHVSMALYQDRLRRVRQMLTKLRRRLY 79


>04_04_0861 +
           28836544-28836609,28838191-28838264,28838551-28838671,
           28838832-28839143,28839241-28839345,28839447-28839901,
           28840116-28840417,28840589-28840767,28841256-28841446,
           28841595-28841728,28841875-28842113
          Length = 725

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 359 YRLQGHYTTTRPNHLFSTLE 300
           YR   +Y TTR NH +S L+
Sbjct: 166 YRFTDYYVTTRANHPYSQLQ 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,898,000
Number of Sequences: 37544
Number of extensions: 193548
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)