Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1012X
         (466 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)         30   0.82 
SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           28   3.3  
SB_37733| Best HMM Match : 7tm_1 (HMM E-Value=0.21)                    28   4.4  
SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)              28   4.4  
SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   4.4  
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)         27   5.8  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    27   7.7  

>SB_42429| Best HMM Match : FAD_binding_8 (HMM E-Value=8.8e-06)
          Length = 359

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 358 IDYKAIIRQHDQIICSQH--WSYYTGCMNPTNIMNFGI 251
           I Y++ + +HD  IC  H  W  +  CM P   + FG+
Sbjct: 65  IRYQSNVDKHDPEICMNHTLWYNHPKCMEPPKFVPFGM 102


>SB_47949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = +2

Query: 173 VCVVTKIFIYIQHSILIKKCFSFFLSNAKIHY 268
           +C+++ + IY+  ++ IK+C  F L+   +++
Sbjct: 79  ICIISLVLIYVMCTLCIKRCPEFALTVTSLYF 110


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -3

Query: 458  NTVY*YKLQSIETFVAQIFTYVNAN----IYIYMYISYRLQGHYTTTRPNHLFSTLELLH 291
            N +  Y+   I T+V  +   VN      IY   YIS   +    T  P H+++T E+  
Sbjct: 850  NLLIRYRANKIYTYVGSVLVAVNPYCSFPIYGTAYISRYQKAVNATDLPPHIYATGEMSF 909

Query: 290  WMYEPNEYNE 261
             M +  ++N+
Sbjct: 910  AMMKREKHNQ 919


>SB_37733| Best HMM Match : 7tm_1 (HMM E-Value=0.21)
          Length = 146

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 383 IYIYMYISYRLQGHYTTT 330
           ++IY+++SY  +GH TTT
Sbjct: 30  LFIYVFVSYYWRGHVTTT 47


>SB_13921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 688

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 353 LQGHYTTTRPNHLFSTLELLHWM-YEPNEYNE 261
           L+G+Y TT P  LF  L  L W+    N  NE
Sbjct: 47  LEGNYLTTLPETLFERLPNLKWLDLRNNHINE 78


>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
          Length = 293

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 283 MNPTNIMNFGIRKKERKTFLNQ 218
           M PT++ +FG+R K R+  LN+
Sbjct: 19  MYPTSLADFGVRPKRRRLILNK 40


>SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 383 IYIYMYISYRLQGHYTTT 330
           ++IY+++SY  +GH TTT
Sbjct: 79  LFIYVFVSYYWRGHVTTT 96


>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
          Length = 823

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 396 RKCKHIYIYVYIISITRPLYDNTTKSF 316
           +KC  I  Y  +I +  PLY++ T SF
Sbjct: 483 KKCPKIVAYKRLIKMNMPLYNDNTVSF 509


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -3

Query: 422 TFVAQIFTYVNANIYIYMYI-SYRLQGHYTTT 330
           TF   I+ Y+   IYIY+YI +Y     YT T
Sbjct: 8   TFYIYIYIYIYIYIYIYIYIYTYTYTYTYTYT 39


>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 209 HSILIKKCFSFFLSNAKIHYIRW 277
           H + +KK   +F ++A ++Y RW
Sbjct: 626 HLVAVKKMLPYFFASAHVNYERW 648


>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 230 CFSFFLSNAKIHYIRWVHTSS 292
           C SFF +N + H+ +WV   S
Sbjct: 48  CLSFFTTNHRRHHTKWVFAGS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,210
Number of Sequences: 59808
Number of extensions: 263768
Number of successful extensions: 570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)