Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1012X
         (466 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   1.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   4.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.5  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 253 IRKKERKTFLNQNTML 206
           ++KK RK  LNQN M+
Sbjct: 6   LKKKRRKKNLNQNQMM 21


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 326 VVLSYNGLVIDMIYTYIYICLHLRR 400
           +++ Y   ++ +IYTY  I L +RR
Sbjct: 209 MIMMYWFPLVVIIYTYTSILLEIRR 233


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 277 PTNIMNFGIRKKERKTFL---NQNTMLYIY 197
           PT  +NF  + K ++ FL   ++NT    Y
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRY 114



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 176 KLKFLIKIEDTFHCFYTIFQF*NSNRF 96
           + K  I  + T HC+ TI++    N F
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAF 272


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -1

Query: 277 PTNIMNFGIRKKERKTFL---NQNTMLYIY 197
           PT  +NF  + K ++ FL   ++NT    Y
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFLRY 114



 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 176 KLKFLIKIEDTFHCFYTIFQF*NSNRF 96
           + K  I  + T HC+ TI++    N F
Sbjct: 246 RAKSEILYKSTLHCWATIYKTEGGNAF 272


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 381 IYIYVYIISITRPLYDN 331
           +YI + II I R +Y+N
Sbjct: 408 VYIIMLIIFIPRNIYEN 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,808
Number of Sequences: 438
Number of extensions: 2701
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)