Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1012X
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22330.1 68417.m03228 alkaline phytoceramidase family / aPHC ...    29   1.5  
At4g19645.2 68417.m02886 expressed protein                             28   2.7  
At4g19645.1 68417.m02885 expressed protein                             28   2.7  
At3g58960.1 68416.m06570 F-box family protein contains F-box dom...    27   8.3  

>At4g22330.1 68417.m03228 alkaline phytoceramidase family / aPHC
           family contains Pfam profile: PF05875: alkaline
           phytoceramidase (aPHC)
          Length = 255

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 383 IYIYMYISYRLQGHYTTTRPNHLF 312
           I +YMYI Y    HY +T P  LF
Sbjct: 98  ILLYMYILYSPDWHYRSTMPTFLF 121


>At4g19645.2 68417.m02886 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 416 VAQIFTYVNANIYIYMYISYRLQGHYTTTRPNHLFSTL 303
           VA  F ++ A I +++Y+ Y +  HY      H F  L
Sbjct: 199 VAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYL 236


>At4g19645.1 68417.m02885 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 416 VAQIFTYVNANIYIYMYISYRLQGHYTTTRPNHLFSTL 303
           VA  F ++ A I +++Y+ Y +  HY      H F  L
Sbjct: 199 VAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTFGYL 236


>At3g58960.1 68416.m06570 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 475

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
 Frame = -1

Query: 316 CSQHWSYYTGCMNPT-NIMNFG---IRKKERKTFLNQNTMLYIYKDFCHNTNLNF*SKSR 149
           C   +S+   C+  T  I  +    I  K  K FL + + L + K F H  +     + R
Sbjct: 391 CLSDYSFLESCLVKTVEISEYSGTKIELKHMKHFLEKLSCLELVKVFSHERDEEEHVQLR 450

Query: 148 THFIVFIRFFNSKTQIGFV 92
           T+ +   R    KTQ  F+
Sbjct: 451 TNLLNLPRSSKCKTQFEFI 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,541,080
Number of Sequences: 28952
Number of extensions: 182507
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)