Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VY28 Cluster: Probable mitochondrial 28S ribosomal pr...   112   1e-23
UniRef50_UPI00005851D0 Cluster: PREDICTED: similar to ENSANGP000...    99   6e-20
UniRef50_P82663 Cluster: Mitochondrial 28S ribosomal protein S25...    90   5e-17
UniRef50_Q9N361 Cluster: Probable mitochondrial 28S ribosomal pr...    71   3e-11
UniRef50_Q5DDM5 Cluster: SJCHGC02544 protein; n=1; Schistosoma j...    69   1e-10
UniRef50_A7S159 Cluster: Predicted protein; n=1; Nematostella ve...    58   3e-07
UniRef50_A7SU42 Cluster: Predicted protein; n=1; Nematostella ve...    46   0.001
UniRef50_Q24CF0 Cluster: Acyltransferase family protein; n=1; Te...    34   3.4  

>UniRef50_Q9VY28 Cluster: Probable mitochondrial 28S ribosomal
           protein S25; n=3; Endopterygota|Rep: Probable
           mitochondrial 28S ribosomal protein S25 - Drosophila
           melanogaster (Fruit fly)
          Length = 167

 Score =  112 bits (269), Expect = 1e-23
 Identities = 45/85 (52%), Positives = 60/85 (70%)
 Frame = +3

Query: 255 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPA 434
           KN+TPSPF++CY DDGR +LID+D++++ DI++HL+  VGK+              DNPA
Sbjct: 69  KNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERLKESKDNPA 128

Query: 435 NFGVGCDRSCMCEVFGQVPCSGVVP 509
           NFG GC R C+CE+ GQVPC G VP
Sbjct: 129 NFGYGCGRHCICEIPGQVPCPGTVP 153



 Score =  111 bits (268), Expect = 1e-23
 Identities = 47/69 (68%), Positives = 59/69 (85%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MPFMKGR PIRRTL YLNAGKLVLKDK+++FSV YN  G ++ G ++F FW +PQIQ+KN
Sbjct: 1   MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKN 60

Query: 232 PDVQIVTLK 258
           P+VQ++TLK
Sbjct: 61  PEVQVLTLK 69


>UniRef50_UPI00005851D0 Cluster: PREDICTED: similar to
           ENSANGP00000014061; n=3; Coelomata|Rep: PREDICTED:
           similar to ENSANGP00000014061 - Strongylocentrotus
           purpuratus
          Length = 187

 Score =   99 bits (238), Expect = 6e-20
 Identities = 45/89 (50%), Positives = 60/89 (67%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+TPSPFI+C+L++G+++LIDV++K+K+DI+EHL   +GKS               NP
Sbjct: 67  FKNITPSPFIRCFLNEGKEVLIDVEDKTKDDIVEHLNKVLGKSERVLATERKAMERSSNP 126

Query: 432 ANFGVGCDRSCMCEVFGQVPCSGVVPYRN 518
           ANFG    R C+CEV GQ PC  VVP  N
Sbjct: 127 ANFGRTYARWCICEVPGQFPCPKVVPMPN 155



 Score = 83.4 bits (197), Expect = 6e-15
 Identities = 35/69 (50%), Positives = 52/69 (75%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MP MKG+ P+RRT+ YL  GK+ L+D +K+ S+ YN  G+ + G ++F F++LPQ+QYKN
Sbjct: 1   MP-MKGKFPLRRTIRYLEQGKIHLRDSVKILSINYNSFGKESDGARDFVFYHLPQLQYKN 59

Query: 232 PDVQIVTLK 258
           P+VQ+ T K
Sbjct: 60  PNVQMQTFK 68


>UniRef50_P82663 Cluster: Mitochondrial 28S ribosomal protein S25;
           n=23; Coelomata|Rep: Mitochondrial 28S ribosomal protein
           S25 - Homo sapiens (Human)
          Length = 173

 Score = 90.2 bits (214), Expect = 5e-17
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+               +P
Sbjct: 67  FKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHP 126

Query: 432 ANFGVG--CDRSCMCEVFGQVPCSGVVP 509
           ANFG    C R C+CEV GQVPC  +VP
Sbjct: 127 ANFGPRKYCLRECICEVEGQVPCPSLVP 154



 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MP MKGR PIRRTL YL+ G +V KD +KV +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 1   MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59

Query: 232 PDVQIVTLK 258
           P VQI+  K
Sbjct: 60  PWVQIMMFK 68


>UniRef50_Q9N361 Cluster: Probable mitochondrial 28S ribosomal
           protein S25; n=2; Caenorhabditis|Rep: Probable
           mitochondrial 28S ribosomal protein S25 - Caenorhabditis
           elegans
          Length = 170

 Score = 70.9 bits (166), Expect = 3e-11
 Identities = 32/79 (40%), Positives = 48/79 (60%)
 Frame = +3

Query: 270 SPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVG 449
           +PF + YL+DGR++L D+D   +E+I + L  T+GK+               NPA+FG  
Sbjct: 75  TPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSK 134

Query: 450 CDRSCMCEVFGQVPCSGVV 506
            +R CMCEV GQ PC+G++
Sbjct: 135 NERQCMCEVQGQHPCTGLL 153



 Score = 66.1 bits (154), Expect = 9e-10
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAY--NITGQNNVGTKEFCFWYLPQIQY 225
           MPFM G  P+RRT  YL  GK+ L+D + VFS+ +  N T + + G ++F +W   Q+QY
Sbjct: 1   MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQS-GARDFVYWNWAQLQY 59

Query: 226 KNPDVQIV 249
            NP VQ+V
Sbjct: 60  HNPKVQLV 67


>UniRef50_Q5DDM5 Cluster: SJCHGC02544 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC02544 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 184

 Score = 69.3 bits (162), Expect = 1e-10
 Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
 Frame = +1

Query: 52  MPFMKG-RAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYK 228
           MPF+KG RA + RT  YL AG+++L D +K+  +++      + G  EF  WYLP +Q++
Sbjct: 1   MPFLKGGRAAVTRTKKYLEAGRILLNDGVKIIVISHIPGAAISHGCDEFIKWYLPPMQFR 60

Query: 229 NPDVQIVTLK 258
           NP++QI+T K
Sbjct: 61  NPNIQIITFK 70



 Score = 60.9 bits (141), Expect = 3e-08
 Identities = 30/82 (36%), Positives = 44/82 (53%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+ P+PFIK Y  +  ++ ++   +   DI +HL HT+                  NP
Sbjct: 69  FKNMFPTPFIKIYFRNEEQV-VNCAFRRNVDIYDHL-HTLLGKPLPSEHSLMNDLTTKNP 126

Query: 432 ANFGVGCDRSCMCEVFGQVPCS 497
           +NFG    R C+CEV+GQ+PCS
Sbjct: 127 SNFGTDFPRQCICEVYGQMPCS 148


>UniRef50_A7S159 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 166

 Score = 57.6 bits (133), Expect = 3e-07
 Identities = 28/65 (43%), Positives = 42/65 (64%)
 Frame = +1

Query: 64  KGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQ 243
           KG+ P RRTL +L+AG++VLK  ++   ++Y    ++  G + F +  LPQIQYKN  VQ
Sbjct: 3   KGKFPFRRTLEFLSAGRVVLKKDVRSVMLSYTHKYESK-GLRNFIYKDLPQIQYKNNAVQ 61

Query: 244 IVTLK 258
            +T K
Sbjct: 62  FITAK 66



 Score = 56.8 bits (131), Expect = 6e-07
 Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 255 KNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXD-NP 431
           K+ T  P +  +  DG+K+++DV+NK   +ILE      G +                NP
Sbjct: 66  KDRTDFPTVDIFYGDGKKVMVDVENKKAPEILEIFSKVAGATESELQIRRQPKYLGRINP 125

Query: 432 ANFGVGCDRSCMCEVFGQVPCSGVVPY 512
           ANFG      C+CE+ GQ PC   VP+
Sbjct: 126 ANFGKYGHMYCICEIPGQAPCPSRVPH 152


>UniRef50_A7SU42 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 139

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +1

Query: 64  KGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQN--NVGTKEFCFWYLPQIQYKNPD 237
           +GR  + RTL++L    + L D +   S+  N+ G+   N G K F +  +PQ++YKNP 
Sbjct: 25  EGRFAVNRTLDHLKRCNVNLPDNVN--SITLNLAGKEKANHGAKRFLYENVPQLKYKNPH 82

Query: 238 VQIVTLK 258
           VQ +  K
Sbjct: 83  VQFMRTK 89


>UniRef50_Q24CF0 Cluster: Acyltransferase family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Acyltransferase
           family protein - Tetrahymena thermophila SB210
          Length = 723

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +3

Query: 243 NSNFKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLL 362
           N+NF+N+ P+P++ C  DD    +I+ +NKS+ ++L + L
Sbjct: 124 NNNFQNVYPAPYVLCLPDDCTSTIIN-ENKSQFNLLLNTL 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,082,168
Number of Sequences: 1657284
Number of extensions: 13658815
Number of successful extensions: 28568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28555
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)