Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   2.9  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    27   2.9  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.0  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 55  PFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNIT-GQNNVGTKEFCFWYLPQIQYKN 231
           PF+  RAP R+T +YL   K V KD      +A   T    +    +F    L Q  +++
Sbjct: 4   PFLTFRAPTRKTGDYL-VSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQS 62


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 121 LKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQ 243
           +KD +  F+V Y+  G + V   ++C   LPQI  KNPD Q
Sbjct: 51  VKDPVDFFAV-YDGHGGDKVA--KWCGSNLPQILEKNPDFQ 88


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 255 KNLTPSPFIKCYLDDGRKILIDVDNKSKE 341
           KN   +P I+C L+  ++ L+   N+SKE
Sbjct: 102 KNNDDAPTIRCALNCTQEFLLSFSNESKE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,091,566
Number of Sequences: 5004
Number of extensions: 63134
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)