Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_14643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)           28   7.2  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_25295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
 Frame = +1

Query: 64  KGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQN--NVGTKEFCFWYLPQIQYKNPD 237
           +GR  + RTL++L    + L D +   S+  N+ G+   N G K F +  +PQ++YKNP 
Sbjct: 25  EGRFAVNRTLDHLKRCNVNLPDNVN--SITLNLAGKEKANHGAKRFLYENVPQLKYKNPH 82

Query: 238 VQIVTLK 258
           VQ +  K
Sbjct: 83  VQFMRTK 89


>SB_14643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 186 KRVLLLVSTANTIQKSRRTNSNFKNLTPSPFIKCYLD 296
           KR +L ++  + I   R  N+N KN    PF+  Y D
Sbjct: 184 KRQILRIANISRIDALRPNNNNHKNSRRIPFVTTYTD 220


>SB_33339| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.15)
          Length = 1224

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 526  SHEFR*GTTPEQGTCPKTSHMHDLSH 449
            SH    G TPE G  P  SH+ D +H
Sbjct: 1030 SHTLEGGNTPEGGNSPGGSHLSDGNH 1055



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 526  SHEFR*GTTPEQGTCPKTSHMHDLSHPTPK 437
            SH      TPE G  P+ SH HD S+ TP+
Sbjct: 994  SHTHDCSNTPEGGNTPRGSHTHDGSN-TPE 1022


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 569 GQLILFNQFDSYIFLS*ISVRHNTRAGHLPENFTHARSI 453
           G +I    F  ++F+S + + +  +A  LP+NF  AR I
Sbjct: 727 GLIIRAVMFGYFVFMSLLCILYAFKARKLPDNFNEARYI 765


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,490,988
Number of Sequences: 59808
Number of extensions: 458093
Number of successful extensions: 1012
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)