Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003590-1|AAH03590.1|  173|Homo sapiens mitochondrial ribosomal...    90   7e-18
AK024702-1|BAB14968.1|  173|Homo sapiens protein ( Homo sapiens ...    90   7e-18
AK024433-1|BAB15723.1|  192|Homo sapiens FLJ00023 protein protein.     90   7e-18
AB061208-1|BAB54958.1|   33|Homo sapiens mitochondrial ribosomal...    35   0.37 

>BC003590-1|AAH03590.1|  173|Homo sapiens mitochondrial ribosomal
           protein S25 protein.
          Length = 173

 Score = 90.2 bits (214), Expect = 7e-18
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+               +P
Sbjct: 67  FKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHP 126

Query: 432 ANFGVG--CDRSCMCEVFGQVPCSGVVP 509
           ANFG    C R C+CEV GQVPC  +VP
Sbjct: 127 ANFGPRKYCLRECICEVEGQVPCPSLVP 154



 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MP MKGR PIRRTL YL+ G +V KD +KV +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 1   MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59

Query: 232 PDVQIVTLK 258
           P VQI+  K
Sbjct: 60  PWVQIMMFK 68


>AK024702-1|BAB14968.1|  173|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21049 fis, clone CAS00384. ).
          Length = 173

 Score = 90.2 bits (214), Expect = 7e-18
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+               +P
Sbjct: 67  FKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHP 126

Query: 432 ANFGVG--CDRSCMCEVFGQVPCSGVVP 509
           ANFG    C R C+CEV GQVPC  +VP
Sbjct: 127 ANFGPRKYCLRECICEVEGQVPCPSLVP 154



 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MP MKGR PIRRTL YL+ G +V KD +KV +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 1   MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59

Query: 232 PDVQIVTLK 258
           P VQI+  K
Sbjct: 60  PWVQIMMFK 68


>AK024433-1|BAB15723.1|  192|Homo sapiens FLJ00023 protein protein.
          Length = 192

 Score = 90.2 bits (214), Expect = 7e-18
 Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 FKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNP 431
           FKN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+               +P
Sbjct: 86  FKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLSHP 145

Query: 432 ANFGVG--CDRSCMCEVFGQVPCSGVVP 509
           ANFG    C R C+CEV GQVPC  +VP
Sbjct: 146 ANFGPRKYCLRECICEVEGQVPCPSLVP 173



 Score = 81.4 bits (192), Expect = 3e-15
 Identities = 39/69 (56%), Positives = 49/69 (71%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 231
           MP MKGR PIRRTL YL+ G +V KD +KV +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 20  MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 78

Query: 232 PDVQIVTLK 258
           P VQI+  K
Sbjct: 79  PWVQIMMFK 87


>AB061208-1|BAB54958.1|   33|Homo sapiens mitochondrial ribosomal
           protein S25 protein.
          Length = 33

 Score = 34.7 bits (76), Expect = 0.37
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 88  TLNYLNAGKLVLKDKIKVFSVAYNITGQNNVG 183
           TL YL+ G +V KD +KV +V YN  G+   G
Sbjct: 1   TLQYLSQGNVVFKDSVKVMTVNYNTHGELGEG 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,213,520
Number of Sequences: 237096
Number of extensions: 2076816
Number of successful extensions: 3387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3382
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)