Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1011
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical...    71   9e-13
Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   3.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   3.6  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>AC024826-16|AAF60793.1|  170|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.1 protein.
          Length = 170

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 32/79 (40%), Positives = 48/79 (60%)
 Frame = +3

Query: 270 SPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXXXXXXDNPANFGVG 449
           +PF + YL+DGR++L D+D   +E+I + L  T+GK+               NPA+FG  
Sbjct: 75  TPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHLESIAKLNPADFGSK 134

Query: 450 CDRSCMCEVFGQVPCSGVV 506
            +R CMCEV GQ PC+G++
Sbjct: 135 NERQCMCEVQGQHPCTGLL 153



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
 Frame = +1

Query: 52  MPFMKGRAPIRRTLNYLNAGKLVLKDKIKVFSVAY--NITGQNNVGTKEFCFWYLPQIQY 225
           MPFM G  P+RRT  YL  GK+ L+D + VFS+ +  N T + + G ++F +W   Q+QY
Sbjct: 1   MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQS-GARDFVYWNWAQLQY 59

Query: 226 KNPDVQIV 249
            NP VQ+V
Sbjct: 60  HNPKVQLV 67


>Z47075-4|CAE17757.1|  129|Caenorhabditis elegans Hypothetical
           protein E02H1.8 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 237 RTNSNFKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGK 377
           R  ++ +N   +PF    LDDG+K+    +N +  D++ +     G+
Sbjct: 69  RVKTDIRNDRRAPFFVATLDDGQKLHFSTENMTAMDVIMNFNRLTGQ 115


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical protein
            C12C8.3b protein.
          Length = 1143

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 180  RNKRVLLLVSTANTIQKSRRTNSNFKNLTPSPFIKCYLDDGRKILIDVDN 329
            RN RV +       ++K    ++ F     SP   CYL DG+ ++ D +N
Sbjct: 955  RNHRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNN 1004


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical protein
            C12C8.3a protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 180  RNKRVLLLVSTANTIQKSRRTNSNFKNLTPSPFIKCYLDDGRKILIDVDN 329
            RN RV +       ++K    ++ F     SP   CYL DG+ ++ D +N
Sbjct: 959  RNHRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNN 1008


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 180  RNKRVLLLVSTANTIQKSRRTNSNFKNLTPSPFIKCYLDDGRKILIDVDN 329
            RN RV +       ++K    ++ F     SP   CYL DG+ ++ D +N
Sbjct: 959  RNHRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNN 1008


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 180  RNKRVLLLVSTANTIQKSRRTNSNFKNLTPSPFIKCYLDDGRKILIDVDN 329
            RN RV +       ++K    ++ F     SP   CYL DG+ ++ D +N
Sbjct: 955  RNHRVQIFTPQGQFVRKCGFDSAYFFKNLDSPRGLCYLPDGQLLITDFNN 1004


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
           protein ZK287.4 protein.
          Length = 1208

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 505 TTPEQGTCPKTSHMHDLSHPTPKF 434
           +TP    CPKTSH+   S P P F
Sbjct: 856 STPHNLCCPKTSHLVPESIPAPPF 879


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,743
Number of Sequences: 27780
Number of extensions: 352453
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)